miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12853 5' -60.9 NC_003387.1 + 10636 1.11 0.00019
Target:  5'- uGUACGAGCCGGGCACCCGCAGCACGCg -3'
miRNA:   3'- -CAUGCUCGGCCCGUGGGCGUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 35233 0.82 0.029902
Target:  5'- cUACG-GCCGcGGCGCCCGCAaGUACGCc -3'
miRNA:   3'- cAUGCuCGGC-CCGUGGGCGU-CGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 12299 0.8 0.039754
Target:  5'- -aGCGGGCCGGGCACCgGCAcgaGCGacaGCa -3'
miRNA:   3'- caUGCUCGGCCCGUGGgCGU---CGUg--CG- -5'
12853 5' -60.9 NC_003387.1 + 21993 0.79 0.048477
Target:  5'- -gACGAGCCGGGuCACCUGCccGGCugaGCGCc -3'
miRNA:   3'- caUGCUCGGCCC-GUGGGCG--UCG---UGCG- -5'
12853 5' -60.9 NC_003387.1 + 46930 0.79 0.054272
Target:  5'- --uUGAGCCGGGCACcgaggugucgauCCGCGGCgaGCGCg -3'
miRNA:   3'- cauGCUCGGCCCGUG------------GGCGUCG--UGCG- -5'
12853 5' -60.9 NC_003387.1 + 18132 0.77 0.07185
Target:  5'- cGUACGucaCCGGGCACCUcaagGCGGUugGCa -3'
miRNA:   3'- -CAUGCuc-GGCCCGUGGG----CGUCGugCG- -5'
12853 5' -60.9 NC_003387.1 + 44614 0.77 0.073883
Target:  5'- cGUACGAGCUGGGCucGCCCucggGCGgGUugGCg -3'
miRNA:   3'- -CAUGCUCGGCCCG--UGGG----CGU-CGugCG- -5'
12853 5' -60.9 NC_003387.1 + 16506 0.76 0.080096
Target:  5'- aUGCGAcgaccucgauuacGCCGaGGCGCCacaGCAGCGCGUa -3'
miRNA:   3'- cAUGCU-------------CGGC-CCGUGGg--CGUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 34270 0.76 0.084903
Target:  5'- --cCGAGUCGGGCGUCaCGguGCGCGCg -3'
miRNA:   3'- cauGCUCGGCCCGUGG-GCguCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 49065 0.76 0.087288
Target:  5'- -gGCGcucaCCGGGCagGCUCGCGGCGCGCa -3'
miRNA:   3'- caUGCuc--GGCCCG--UGGGCGUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 37533 0.75 0.097211
Target:  5'- cGgcCGGGCgCGGGCcuccucgucgaucACCuCGCGGCGCGCg -3'
miRNA:   3'- -CauGCUCG-GCCCG-------------UGG-GCGUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 44736 0.75 0.100197
Target:  5'- --cCG-GCCgGGGCGCCgaagCGCAGCACGCc -3'
miRNA:   3'- cauGCuCGG-CCCGUGG----GCGUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 37837 0.74 0.1118
Target:  5'- -aGCGAgGUCGGGCACCCcugcgcccgGCGGCuCGCc -3'
miRNA:   3'- caUGCU-CGGCCCGUGGG---------CGUCGuGCG- -5'
12853 5' -60.9 NC_003387.1 + 44898 0.74 0.1118
Target:  5'- cUGCGcGCCGGGCACCU-CGGC-CGCc -3'
miRNA:   3'- cAUGCuCGGCCCGUGGGcGUCGuGCG- -5'
12853 5' -60.9 NC_003387.1 + 22911 0.74 0.114579
Target:  5'- cUACGGGCCGGGCGggugacgcuagucCUCGauCGGCAUGCg -3'
miRNA:   3'- cAUGCUCGGCCCGU-------------GGGC--GUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 10223 0.74 0.114891
Target:  5'- --uUGAGUCGGGCAUCCGCG--ACGCg -3'
miRNA:   3'- cauGCUCGGCCCGUGGGCGUcgUGCG- -5'
12853 5' -60.9 NC_003387.1 + 8197 0.74 0.114891
Target:  5'- cUGCGGcGCCGGGCGgCC-CGGCACGa -3'
miRNA:   3'- cAUGCU-CGGCCCGUgGGcGUCGUGCg -5'
12853 5' -60.9 NC_003387.1 + 41767 0.74 0.117742
Target:  5'- gGUGCGAccucgacgucaaGCCGGGCGCgugCCGCGaccuggcGCACGCc -3'
miRNA:   3'- -CAUGCU------------CGGCCCGUG---GGCGU-------CGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 49305 0.73 0.131579
Target:  5'- cUGCGucauGCCGGGCACCauCGaCAGCAgGUg -3'
miRNA:   3'- cAUGCu---CGGCCCGUGG--GC-GUCGUgCG- -5'
12853 5' -60.9 NC_003387.1 + 42737 0.73 0.131579
Target:  5'- -aACGGGUCGGGUgcGCCCuGCGGCggauucuuauGCGCg -3'
miRNA:   3'- caUGCUCGGCCCG--UGGG-CGUCG----------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.