miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12853 5' -60.9 NC_003387.1 + 35233 0.82 0.029902
Target:  5'- cUACG-GCCGcGGCGCCCGCAaGUACGCc -3'
miRNA:   3'- cAUGCuCGGC-CCGUGGGCGU-CGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 41390 0.71 0.190783
Target:  5'- --cCGAgcGCCGGGCgACCgaggCGCAGCACGa -3'
miRNA:   3'- cauGCU--CGGCCCG-UGG----GCGUCGUGCg -5'
12853 5' -60.9 NC_003387.1 + 29391 0.71 0.19939
Target:  5'- -gACGAccucgaucucgcccGCCGGGCGCaggaggaggccgCCGCAGCggcccGCGCg -3'
miRNA:   3'- caUGCU--------------CGGCCCGUG------------GGCGUCG-----UGCG- -5'
12853 5' -60.9 NC_003387.1 + 1757 0.66 0.432861
Target:  5'- -cAUGAGCCcGGCGgCgGC-GCugGCg -3'
miRNA:   3'- caUGCUCGGcCCGUgGgCGuCGugCG- -5'
12853 5' -60.9 NC_003387.1 + 34270 0.76 0.084903
Target:  5'- --cCGAGUCGGGCGUCaCGguGCGCGCg -3'
miRNA:   3'- cauGCUCGGCCCGUGG-GCguCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 49065 0.76 0.087288
Target:  5'- -gGCGcucaCCGGGCagGCUCGCGGCGCGCa -3'
miRNA:   3'- caUGCuc--GGCCCG--UGGGCGUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 37837 0.74 0.1118
Target:  5'- -aGCGAgGUCGGGCACCCcugcgcccgGCGGCuCGCc -3'
miRNA:   3'- caUGCU-CGGCCCGUGGG---------CGUCGuGCG- -5'
12853 5' -60.9 NC_003387.1 + 10223 0.74 0.114891
Target:  5'- --uUGAGUCGGGCAUCCGCG--ACGCg -3'
miRNA:   3'- cauGCUCGGCCCGUGGGCGUcgUGCG- -5'
12853 5' -60.9 NC_003387.1 + 7483 0.73 0.13886
Target:  5'- --cCGAGCCGcGCACCCGCAcccGCugGg -3'
miRNA:   3'- cauGCUCGGCcCGUGGGCGU---CGugCg -5'
12853 5' -60.9 NC_003387.1 + 37183 0.71 0.185874
Target:  5'- -gGCG-GCCcGGCACCCcgagcgcguGCAGCAgGCg -3'
miRNA:   3'- caUGCuCGGcCCGUGGG---------CGUCGUgCG- -5'
12853 5' -60.9 NC_003387.1 + 1720 0.73 0.150477
Target:  5'- -aGCGGGCCGGGCGgcgcauCCCGguGCugauCGa -3'
miRNA:   3'- caUGCUCGGCCCGU------GGGCguCGu---GCg -5'
12853 5' -60.9 NC_003387.1 + 34975 0.73 0.135175
Target:  5'- -cGCGGGCCuGGUGCCCGuCGGCAaGCc -3'
miRNA:   3'- caUGCUCGGcCCGUGGGC-GUCGUgCG- -5'
12853 5' -60.9 NC_003387.1 + 12299 0.8 0.039754
Target:  5'- -aGCGGGCCGGGCACCgGCAcgaGCGacaGCa -3'
miRNA:   3'- caUGCUCGGCCCGUGGgCGU---CGUg--CG- -5'
12853 5' -60.9 NC_003387.1 + 18508 0.73 0.150477
Target:  5'- --uUGAGCCGGGCACCgaccgcgaCGUGGCGCuGUg -3'
miRNA:   3'- cauGCUCGGCCCGUGG--------GCGUCGUG-CG- -5'
12853 5' -60.9 NC_003387.1 + 46930 0.79 0.054272
Target:  5'- --uUGAGCCGGGCACcgaggugucgauCCGCGGCgaGCGCg -3'
miRNA:   3'- cauGCUCGGCCCGUG------------GGCGUCG--UGCG- -5'
12853 5' -60.9 NC_003387.1 + 41767 0.74 0.117742
Target:  5'- gGUGCGAccucgacgucaaGCCGGGCGCgugCCGCGaccuggcGCACGCc -3'
miRNA:   3'- -CAUGCU------------CGGCCCGUG---GGCGU-------CGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 23748 0.72 0.158706
Target:  5'- -aGCG-GUCGGGCGuCCCGCAG-GCGUa -3'
miRNA:   3'- caUGCuCGGCCCGU-GGGCGUCgUGCG- -5'
12853 5' -60.9 NC_003387.1 + 37787 0.71 0.195805
Target:  5'- -aGCGcGCCuGGGCgcagcACCCGCggucgcagcAGCGCGCg -3'
miRNA:   3'- caUGCuCGG-CCCG-----UGGGCG---------UCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 18132 0.77 0.07185
Target:  5'- cGUACGucaCCGGGCACCUcaagGCGGUugGCa -3'
miRNA:   3'- -CAUGCuc-GGCCCGUGGG----CGUCGugCG- -5'
12853 5' -60.9 NC_003387.1 + 44736 0.75 0.100197
Target:  5'- --cCG-GCCgGGGCGCCgaagCGCAGCACGCc -3'
miRNA:   3'- cauGCuCGG-CCCGUGG----GCGUCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.