miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12853 5' -60.9 NC_003387.1 + 321 0.68 0.29569
Target:  5'- --cCGAGCCcGGCgacacgcacgccaagAUCCGCGuGCGCGCg -3'
miRNA:   3'- cauGCUCGGcCCG---------------UGGGCGU-CGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 483 0.66 0.423597
Target:  5'- -cGCGAGCUGcucgucgcgauGcGCGCCCGCguGGCGacCGCg -3'
miRNA:   3'- caUGCUCGGC-----------C-CGUGGGCG--UCGU--GCG- -5'
12853 5' -60.9 NC_003387.1 + 793 0.69 0.245762
Target:  5'- -aGCGAGCCGGGUcacgaugaugucgGCCagcucggGCAGCACc- -3'
miRNA:   3'- caUGCUCGGCCCG-------------UGGg------CGUCGUGcg -5'
12853 5' -60.9 NC_003387.1 + 1135 0.69 0.272134
Target:  5'- -cACGGuguGCUcGGCGCCUGCGuGCAUGCg -3'
miRNA:   3'- caUGCU---CGGcCCGUGGGCGU-CGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 1609 0.67 0.345864
Target:  5'- uGUuCG-GCCGGGCGCgUguggGCAGCcucGCGCg -3'
miRNA:   3'- -CAuGCuCGGCCCGUGgG----CGUCG---UGCG- -5'
12853 5' -60.9 NC_003387.1 + 1720 0.73 0.150477
Target:  5'- -aGCGGGCCGGGCGgcgcauCCCGguGCugauCGa -3'
miRNA:   3'- caUGCUCGGCCCGU------GGGCguCGu---GCg -5'
12853 5' -60.9 NC_003387.1 + 1757 0.66 0.432861
Target:  5'- -cAUGAGCCcGGCGgCgGC-GCugGCg -3'
miRNA:   3'- caUGCUCGGcCCGUgGgCGuCGugCG- -5'
12853 5' -60.9 NC_003387.1 + 2722 0.7 0.211027
Target:  5'- -cGCGGGCggCGGGCagGCCaCGCAGCagccggugaacguGCGCg -3'
miRNA:   3'- caUGCUCG--GCCCG--UGG-GCGUCG-------------UGCG- -5'
12853 5' -60.9 NC_003387.1 + 2937 0.73 0.142638
Target:  5'- -cGCGGuUCGGcGCcaACCCGCAGCGCGUg -3'
miRNA:   3'- caUGCUcGGCC-CG--UGGGCGUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 3029 0.69 0.246379
Target:  5'- -cACGuucauGCCGGGCugCaCGCucAGCACuGCu -3'
miRNA:   3'- caUGCu----CGGCCCGugG-GCG--UCGUG-CG- -5'
12853 5' -60.9 NC_003387.1 + 3283 0.68 0.285803
Target:  5'- uGUGCGuGCCGGGUACUgCuCGGCgACGUu -3'
miRNA:   3'- -CAUGCuCGGCCCGUGG-GcGUCG-UGCG- -5'
12853 5' -60.9 NC_003387.1 + 3441 0.66 0.387762
Target:  5'- -gGCGAGCaccuGGGCgACCuucaCGCGGUcgauGCGCg -3'
miRNA:   3'- caUGCUCGg---CCCG-UGG----GCGUCG----UGCG- -5'
12853 5' -60.9 NC_003387.1 + 3659 0.66 0.423597
Target:  5'- -cGCGAGCCugcccGGugaGCGCCaGCAGCGCa- -3'
miRNA:   3'- caUGCUCGG-----CC---CGUGGgCGUCGUGcg -5'
12853 5' -60.9 NC_003387.1 + 3952 0.68 0.314752
Target:  5'- -gGCGAGCUGGcuGCGCCgaGCAcCGCGUg -3'
miRNA:   3'- caUGCUCGGCC--CGUGGg-CGUcGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 4152 0.66 0.387762
Target:  5'- -gGCGAGgCGGGCgucgauGCaCGCcuGGCACGUg -3'
miRNA:   3'- caUGCUCgGCCCG------UGgGCG--UCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 4424 0.66 0.414452
Target:  5'- --cCGAGCUGGGCAaggcgUUCGCcgAGCcCGCg -3'
miRNA:   3'- cauGCUCGGCCCGU-----GGGCG--UCGuGCG- -5'
12853 5' -60.9 NC_003387.1 + 4539 0.68 0.314752
Target:  5'- gGUGCGGGCaccuugCGGGCcugcGCCUGCGcgacCGCGCg -3'
miRNA:   3'- -CAUGCUCG------GCCCG----UGGGCGUc---GUGCG- -5'
12853 5' -60.9 NC_003387.1 + 4620 0.72 0.167339
Target:  5'- -gGCGAGCCaccgcGGGCGCa-GCGGCAgCGCc -3'
miRNA:   3'- caUGCUCGG-----CCCGUGggCGUCGU-GCG- -5'
12853 5' -60.9 NC_003387.1 + 5098 0.66 0.396532
Target:  5'- -cGCGGGCCauguGGGCGagguUCUGCGGCGagaacCGCa -3'
miRNA:   3'- caUGCUCGG----CCCGU----GGGCGUCGU-----GCG- -5'
12853 5' -60.9 NC_003387.1 + 5515 0.66 0.432861
Target:  5'- --uCGAGCaGcGGCucGCCCGCgAGCGgGCg -3'
miRNA:   3'- cauGCUCGgC-CCG--UGGGCG-UCGUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.