miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12853 5' -60.9 NC_003387.1 + 1757 0.66 0.432861
Target:  5'- -cAUGAGCCcGGCGgCgGC-GCugGCg -3'
miRNA:   3'- caUGCUCGGcCCGUgGgCGuCGugCG- -5'
12853 5' -60.9 NC_003387.1 + 39767 0.66 0.396532
Target:  5'- gGUACGAGCCGccaGaCGCCgaCGUGGCACuGCc -3'
miRNA:   3'- -CAUGCUCGGCc--C-GUGG--GCGUCGUG-CG- -5'
12853 5' -60.9 NC_003387.1 + 5098 0.66 0.396532
Target:  5'- -cGCGGGCCauguGGGCGagguUCUGCGGCGagaacCGCa -3'
miRNA:   3'- caUGCUCGG----CCCGU----GGGCGUCGU-----GCG- -5'
12853 5' -60.9 NC_003387.1 + 48879 0.66 0.396532
Target:  5'- cUGCGuguuuGCUGGGCcaccgcgaaaucGCCUGCgAGCuGCGCg -3'
miRNA:   3'- cAUGCu----CGGCCCG------------UGGGCG-UCG-UGCG- -5'
12853 5' -60.9 NC_003387.1 + 19411 0.66 0.396532
Target:  5'- cGUGCGGGCCuugaugccaaGGGC-CuuGCA-CACGUc -3'
miRNA:   3'- -CAUGCUCGG----------CCCGuGggCGUcGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 33559 0.66 0.387762
Target:  5'- cGUGCGGGCCGcGCcCUCGaCAGCGuCGa -3'
miRNA:   3'- -CAUGCUCGGCcCGuGGGC-GUCGU-GCg -5'
12853 5' -60.9 NC_003387.1 + 19463 0.66 0.387762
Target:  5'- -gGCGgcaGGCCGGGCAggaCGUcgucgAGCACGUa -3'
miRNA:   3'- caUGC---UCGGCCCGUgg-GCG-----UCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 4152 0.66 0.387762
Target:  5'- -gGCGAGgCGGGCgucgauGCaCGCcuGGCACGUg -3'
miRNA:   3'- caUGCUCgGCCCG------UGgGCG--UCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 3441 0.66 0.387762
Target:  5'- -gGCGAGCaccuGGGCgACCuucaCGCGGUcgauGCGCg -3'
miRNA:   3'- caUGCUCGg---CCCG-UGG----GCGUCG----UGCG- -5'
12853 5' -60.9 NC_003387.1 + 50945 0.66 0.40543
Target:  5'- uUGCGGGCuuucagcuCGGGCGCCagCGCcGC-CGCc -3'
miRNA:   3'- cAUGCUCG--------GCCCGUGG--GCGuCGuGCG- -5'
12853 5' -60.9 NC_003387.1 + 15755 0.66 0.40543
Target:  5'- -cAUGAuCgGGGCguacaGCCUGCGGUugGCg -3'
miRNA:   3'- caUGCUcGgCCCG-----UGGGCGUCGugCG- -5'
12853 5' -60.9 NC_003387.1 + 52334 0.66 0.413544
Target:  5'- gGUGCGAGUgcacucgacgagaUGGGCGCggaaCCGCu-CGCGCa -3'
miRNA:   3'- -CAUGCUCG-------------GCCCGUG----GGCGucGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 22726 0.66 0.432861
Target:  5'- -gACcAGUCGGGCguACUCGCGGU-CGCu -3'
miRNA:   3'- caUGcUCGGCCCG--UGGGCGUCGuGCG- -5'
12853 5' -60.9 NC_003387.1 + 10925 0.66 0.423597
Target:  5'- cUGCcAGgCGuGCGCCagguCGCGGCACGCg -3'
miRNA:   3'- cAUGcUCgGCcCGUGG----GCGUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 3659 0.66 0.423597
Target:  5'- -cGCGAGCCugcccGGugaGCGCCaGCAGCGCa- -3'
miRNA:   3'- caUGCUCGG-----CC---CGUGGgCGUCGUGcg -5'
12853 5' -60.9 NC_003387.1 + 31275 0.66 0.423597
Target:  5'- -aGCgGGGCCGGGUuaguugaccAgCCGUAGCugcuGCGCc -3'
miRNA:   3'- caUG-CUCGGCCCG---------UgGGCGUCG----UGCG- -5'
12853 5' -60.9 NC_003387.1 + 46122 0.66 0.422677
Target:  5'- -aACGAGucgucgcggaacaCCGGGUugCCGUucGCGuCGCg -3'
miRNA:   3'- caUGCUC-------------GGCCCGugGGCGu-CGU-GCG- -5'
12853 5' -60.9 NC_003387.1 + 48411 0.66 0.418095
Target:  5'- -gGCGuugagccacuGCCGGGUcgcggugcgcugcucGCCCGCGGCcuccauCGCc -3'
miRNA:   3'- caUGCu---------CGGCCCG---------------UGGGCGUCGu-----GCG- -5'
12853 5' -60.9 NC_003387.1 + 17195 0.66 0.414452
Target:  5'- -gGCGGGCCaGGUugUCGCGcaaCACGUc -3'
miRNA:   3'- caUGCUCGGcCCGugGGCGUc--GUGCG- -5'
12853 5' -60.9 NC_003387.1 + 37045 0.66 0.414452
Target:  5'- -cACGcGCCGGGauucauCACCUGCgugGGCAaCGCc -3'
miRNA:   3'- caUGCuCGGCCC------GUGGGCG---UCGU-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.