miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12870 3' -54.5 NC_003387.1 + 13242 0.7 0.518049
Target:  5'- gCAGGC-CGACAGCGAUCugcgcaccaAGGGCa -3'
miRNA:   3'- -GUUCGcGCUGUUGCUAGcag------UCCCGc -5'
12870 3' -54.5 NC_003387.1 + 39513 0.7 0.528657
Target:  5'- aCAAGCuCaACAACGAUCa-CAGGGCGu -3'
miRNA:   3'- -GUUCGcGcUGUUGCUAGcaGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 26486 0.7 0.528657
Target:  5'- ----aGC-ACGGCGAUCGcCGGGGCGa -3'
miRNA:   3'- guucgCGcUGUUGCUAGCaGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 10908 0.7 0.539346
Target:  5'- -cAGCgGCGACGcgcugcaggacAUGGUCGcgCAGGGCGc -3'
miRNA:   3'- guUCG-CGCUGU-----------UGCUAGCa-GUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 6792 0.7 0.539346
Target:  5'- cCGAGCGCGAC-AUGGUCGcccugcggcUCAaGGCGc -3'
miRNA:   3'- -GUUCGCGCUGuUGCUAGC---------AGUcCCGC- -5'
12870 3' -54.5 NC_003387.1 + 45168 0.7 0.539346
Target:  5'- -cAGUGaUGAC-GCGAUCGgcCAGGGCGg -3'
miRNA:   3'- guUCGC-GCUGuUGCUAGCa-GUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 3598 0.69 0.549027
Target:  5'- aCAGGCGCGACGggugacaGCGGgugcgCGUCgAGGuGCu -3'
miRNA:   3'- -GUUCGCGCUGU-------UGCUa----GCAG-UCC-CGc -5'
12870 3' -54.5 NC_003387.1 + 28021 0.69 0.550106
Target:  5'- aCGAGCGCGGCAAgcCGAUCcUCGGcGaGCu -3'
miRNA:   3'- -GUUCGCGCUGUU--GCUAGcAGUC-C-CGc -5'
12870 3' -54.5 NC_003387.1 + 20656 0.69 0.550106
Target:  5'- uGAGCGCGA--ACGggCGcUCGGcGGCGa -3'
miRNA:   3'- gUUCGCGCUguUGCuaGC-AGUC-CCGC- -5'
12870 3' -54.5 NC_003387.1 + 6843 0.69 0.550106
Target:  5'- uGGGUGUGAgcGCGAcCGcUCAGGGCGc -3'
miRNA:   3'- gUUCGCGCUguUGCUaGC-AGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 5692 0.69 0.560932
Target:  5'- gCAAG-GUGGCGGCGGUCa--AGGGCGu -3'
miRNA:   3'- -GUUCgCGCUGUUGCUAGcagUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 23415 0.69 0.560932
Target:  5'- aCAAGCGCGGCGcCug-CGUCAuugcGGGCa -3'
miRNA:   3'- -GUUCGCGCUGUuGcuaGCAGU----CCCGc -5'
12870 3' -54.5 NC_003387.1 + 12978 0.69 0.571815
Target:  5'- cCGGGCGgccacCGACGACGAgcuuaaggcgUCGUC-GGGCa -3'
miRNA:   3'- -GUUCGC-----GCUGUUGCU----------AGCAGuCCCGc -5'
12870 3' -54.5 NC_003387.1 + 8 0.69 0.571815
Target:  5'- gAGGgGCG-CcGCGAUCGUucgCGGGGCa -3'
miRNA:   3'- gUUCgCGCuGuUGCUAGCA---GUCCCGc -5'
12870 3' -54.5 NC_003387.1 + 12794 0.69 0.571815
Target:  5'- gCAAuGCGCGccucGCAACGAccgcagucgUCGcCGGGGCa -3'
miRNA:   3'- -GUU-CGCGC----UGUUGCU---------AGCaGUCCCGc -5'
12870 3' -54.5 NC_003387.1 + 40296 0.69 0.579463
Target:  5'- uCGAG-GaCGACGACGGcaagcgccgccuguUCGUCAaGGGCGa -3'
miRNA:   3'- -GUUCgC-GCUGUUGCU--------------AGCAGU-CCCGC- -5'
12870 3' -54.5 NC_003387.1 + 15462 0.69 0.582748
Target:  5'- gAAGCGCGGCGAgGAUgGUCuGcGCa -3'
miRNA:   3'- gUUCGCGCUGUUgCUAgCAGuCcCGc -5'
12870 3' -54.5 NC_003387.1 + 2075 0.69 0.582748
Target:  5'- --uGCGCGAC-GCGGUCcUCGGcGGUGa -3'
miRNA:   3'- guuCGCGCUGuUGCUAGcAGUC-CCGC- -5'
12870 3' -54.5 NC_003387.1 + 4631 0.69 0.592624
Target:  5'- gCGGGCgcaGCGGCAGCGccacccGUCGaggcgcuUCGGGGCGc -3'
miRNA:   3'- -GUUCG---CGCUGUUGC------UAGC-------AGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 41766 0.69 0.593723
Target:  5'- -uGGUGCGACcuCGA-CGUCAagccGGGCGc -3'
miRNA:   3'- guUCGCGCUGuuGCUaGCAGU----CCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.