miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12870 3' -54.5 NC_003387.1 + 3817 1.09 0.001143
Target:  5'- gCAAGCGCGACAACGAUCGUCAGGGCGg -3'
miRNA:   3'- -GUUCGCGCUGUUGCUAGCAGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 22172 0.8 0.123419
Target:  5'- -cGGcCGCGGCGGCGGUCcauGUCGGGGCGc -3'
miRNA:   3'- guUC-GCGCUGUUGCUAG---CAGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 13705 0.78 0.176881
Target:  5'- cCGAGCGCGGCccaGGCGG-CG-CAGGGCGa -3'
miRNA:   3'- -GUUCGCGCUG---UUGCUaGCaGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 11249 0.77 0.213534
Target:  5'- -uGGUGCGACAuugggGCGGgggcaGUCAGGGCGg -3'
miRNA:   3'- guUCGCGCUGU-----UGCUag---CAGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 43454 0.77 0.219274
Target:  5'- uCAAGCugcugaccgGCGGCGACGuccUGUCGGGGCGg -3'
miRNA:   3'- -GUUCG---------CGCUGUUGCua-GCAGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 10420 0.76 0.249973
Target:  5'- --cGCGCcACGccuUGAUCGUCGGGGCGa -3'
miRNA:   3'- guuCGCGcUGUu--GCUAGCAGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 4495 0.75 0.256523
Target:  5'- cCGGGCGCGAC-ACGAUCGUgcGGGUc -3'
miRNA:   3'- -GUUCGCGCUGuUGCUAGCAguCCCGc -5'
12870 3' -54.5 NC_003387.1 + 30955 0.75 0.284133
Target:  5'- uGAGCGCGaACAGCG--CGUCGGuGGCGc -3'
miRNA:   3'- gUUCGCGC-UGUUGCuaGCAGUC-CCGC- -5'
12870 3' -54.5 NC_003387.1 + 41140 0.75 0.284133
Target:  5'- -cAGCGCGcCGACGGccgcugcgagUGUCAGGGCGa -3'
miRNA:   3'- guUCGCGCuGUUGCUa---------GCAGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 30061 0.73 0.346269
Target:  5'- aCGAGCGCGcCcuGACGGcCGcCGGGGCGa -3'
miRNA:   3'- -GUUCGCGCuG--UUGCUaGCaGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 43112 0.73 0.363251
Target:  5'- aCGAGCGCGACGGCGcggCGccgCGGuGGUGg -3'
miRNA:   3'- -GUUCGCGCUGUUGCua-GCa--GUC-CCGC- -5'
12870 3' -54.5 NC_003387.1 + 51135 0.73 0.363251
Target:  5'- --cGUGCGACAuguCGAcCGcCAGGGCGu -3'
miRNA:   3'- guuCGCGCUGUu--GCUaGCaGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 43832 0.72 0.398908
Target:  5'- gCGAGgGCGAgGcCGAg-GUCGGGGCGg -3'
miRNA:   3'- -GUUCgCGCUgUuGCUagCAGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 6121 0.71 0.436728
Target:  5'- aCAuGCGCGGCAGCGG-CuUgAGGGCGc -3'
miRNA:   3'- -GUuCGCGCUGUUGCUaGcAgUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 20155 0.71 0.446501
Target:  5'- -cAGCGCGAaccCGAgggCGUCgAGGGCGc -3'
miRNA:   3'- guUCGCGCUguuGCUa--GCAG-UCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 51354 0.71 0.446501
Target:  5'- --uGCGCcACugcgAGCGGUCGUCGGGGuCGg -3'
miRNA:   3'- guuCGCGcUG----UUGCUAGCAGUCCC-GC- -5'
12870 3' -54.5 NC_003387.1 + 50689 0.71 0.456395
Target:  5'- -cAGCucgGCGACGGCGGcCGUCGGcGGCa -3'
miRNA:   3'- guUCG---CGCUGUUGCUaGCAGUC-CCGc -5'
12870 3' -54.5 NC_003387.1 + 765 0.71 0.466406
Target:  5'- ---cCGCGGCAGCGA-CGUC-GGGCa -3'
miRNA:   3'- guucGCGCUGUUGCUaGCAGuCCCGc -5'
12870 3' -54.5 NC_003387.1 + 6067 0.71 0.48676
Target:  5'- uCGAGCGCaccAUGACGAcCGcCGGGGCGu -3'
miRNA:   3'- -GUUCGCGc--UGUUGCUaGCaGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 1052 0.7 0.497094
Target:  5'- gCAAGgGCcGCAACGAgaaUCGUUAGcGGCa -3'
miRNA:   3'- -GUUCgCGcUGUUGCU---AGCAGUC-CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.