miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12870 3' -54.5 NC_003387.1 + 8 0.69 0.571815
Target:  5'- gAGGgGCG-CcGCGAUCGUucgCGGGGCa -3'
miRNA:   3'- gUUCgCGCuGuUGCUAGCA---GUCCCGc -5'
12870 3' -54.5 NC_003387.1 + 635 0.66 0.73579
Target:  5'- -cAGUGgGGCAgGCGGUCGagUAGGGCc -3'
miRNA:   3'- guUCGCgCUGU-UGCUAGCa-GUCCCGc -5'
12870 3' -54.5 NC_003387.1 + 765 0.71 0.466406
Target:  5'- ---cCGCGGCAGCGA-CGUC-GGGCa -3'
miRNA:   3'- guucGCGCUGUUGCUaGCAGuCCCGc -5'
12870 3' -54.5 NC_003387.1 + 822 0.66 0.756692
Target:  5'- gAAGCGCGACGACGGccUGUaCGcGGCc -3'
miRNA:   3'- gUUCGCGCUGUUGCUa-GCA-GUcCCGc -5'
12870 3' -54.5 NC_003387.1 + 1052 0.7 0.497094
Target:  5'- gCAAGgGCcGCAACGAgaaUCGUUAGcGGCa -3'
miRNA:   3'- -GUUCgCGcUGUUGCU---AGCAGUC-CCGc -5'
12870 3' -54.5 NC_003387.1 + 1311 0.66 0.766956
Target:  5'- gCGGGCGaCGuCGACGA-CGUC-GGGUa -3'
miRNA:   3'- -GUUCGC-GCuGUUGCUaGCAGuCCCGc -5'
12870 3' -54.5 NC_003387.1 + 1505 0.67 0.670934
Target:  5'- -cAGCGUGcacCAGcCGGUCGugaagUCGGGGCGg -3'
miRNA:   3'- guUCGCGCu--GUU-GCUAGC-----AGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 2075 0.69 0.582748
Target:  5'- --uGCGCGAC-GCGGUCcUCGGcGGUGa -3'
miRNA:   3'- guuCGCGCUGuUGCUAGcAGUC-CCGC- -5'
12870 3' -54.5 NC_003387.1 + 2599 0.66 0.77708
Target:  5'- --uGCGUaACGGCGAUCGUgacCAGGcGCu -3'
miRNA:   3'- guuCGCGcUGUUGCUAGCA---GUCC-CGc -5'
12870 3' -54.5 NC_003387.1 + 3598 0.69 0.549027
Target:  5'- aCAGGCGCGACGggugacaGCGGgugcgCGUCgAGGuGCu -3'
miRNA:   3'- -GUUCGCGCUGU-------UGCUa----GCAG-UCC-CGc -5'
12870 3' -54.5 NC_003387.1 + 3817 1.09 0.001143
Target:  5'- gCAAGCGCGACAACGAUCGUCAGGGCGg -3'
miRNA:   3'- -GUUCGCGCUGUUGCUAGCAGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 3849 0.67 0.681901
Target:  5'- gUAGGCgGCGcCGACGAUCcGgcugcgcacCAGGGCGu -3'
miRNA:   3'- -GUUCG-CGCuGUUGCUAG-Ca--------GUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 4031 0.66 0.756692
Target:  5'- cCAAGCGCGAgGGCGugCGgu-GGGUGc -3'
miRNA:   3'- -GUUCGCGCUgUUGCuaGCaguCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 4495 0.75 0.256523
Target:  5'- cCGGGCGCGAC-ACGAUCGUgcGGGUc -3'
miRNA:   3'- -GUUCGCGCUGuUGCUAGCAguCCCGc -5'
12870 3' -54.5 NC_003387.1 + 4631 0.69 0.592624
Target:  5'- gCGGGCgcaGCGGCAGCGccacccGUCGaggcgcuUCGGGGCGc -3'
miRNA:   3'- -GUUCG---CGCUGUUGC------UAGC-------AGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 5446 0.68 0.615761
Target:  5'- aGGGCGcCGACGGCGGccaaagCGgugacCAGGGCa -3'
miRNA:   3'- gUUCGC-GCUGUUGCUa-----GCa----GUCCCGc -5'
12870 3' -54.5 NC_003387.1 + 5692 0.69 0.560932
Target:  5'- gCAAG-GUGGCGGCGGUCa--AGGGCGu -3'
miRNA:   3'- -GUUCgCGCUGUUGCUAGcagUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 6067 0.71 0.48676
Target:  5'- uCGAGCGCaccAUGACGAcCGcCGGGGCGu -3'
miRNA:   3'- -GUUCGCGc--UGUUGCUaGCaGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 6121 0.71 0.436728
Target:  5'- aCAuGCGCGGCAGCGG-CuUgAGGGCGc -3'
miRNA:   3'- -GUuCGCGCUGUUGCUaGcAgUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 6792 0.7 0.539346
Target:  5'- cCGAGCGCGAC-AUGGUCGcccugcggcUCAaGGCGc -3'
miRNA:   3'- -GUUCGCGCUGuUGCUAGC---------AGUcCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.