miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12870 3' -54.5 NC_003387.1 + 13705 0.78 0.176881
Target:  5'- cCGAGCGCGGCccaGGCGG-CG-CAGGGCGa -3'
miRNA:   3'- -GUUCGCGCUG---UUGCUaGCaGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 41766 0.69 0.593723
Target:  5'- -uGGUGCGACcuCGA-CGUCAagccGGGCGc -3'
miRNA:   3'- guUCGCGCUGuuGCUaGCAGU----CCCGC- -5'
12870 3' -54.5 NC_003387.1 + 5446 0.68 0.615761
Target:  5'- aGGGCGcCGACGGCGGccaaagCGgugacCAGGGCa -3'
miRNA:   3'- gUUCGC-GCUGUUGCUa-----GCa----GUCCCGc -5'
12870 3' -54.5 NC_003387.1 + 13175 0.66 0.77708
Target:  5'- cCGAGCGCGACcuggccgacGCGAUCGagaAGcGCGg -3'
miRNA:   3'- -GUUCGCGCUGu--------UGCUAGCag-UCcCGC- -5'
12870 3' -54.5 NC_003387.1 + 43112 0.73 0.363251
Target:  5'- aCGAGCGCGACGGCGcggCGccgCGGuGGUGg -3'
miRNA:   3'- -GUUCGCGCUGUUGCua-GCa--GUC-CCGC- -5'
12870 3' -54.5 NC_003387.1 + 43832 0.72 0.398908
Target:  5'- gCGAGgGCGAgGcCGAg-GUCGGGGCGg -3'
miRNA:   3'- -GUUCgCGCUgUuGCUagCAGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 39513 0.7 0.528657
Target:  5'- aCAAGCuCaACAACGAUCa-CAGGGCGu -3'
miRNA:   3'- -GUUCGcGcUGUUGCUAGcaGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 6792 0.7 0.539346
Target:  5'- cCGAGCGCGAC-AUGGUCGcccugcggcUCAaGGCGc -3'
miRNA:   3'- -GUUCGCGCUGuUGCUAGC---------AGUcCCGC- -5'
12870 3' -54.5 NC_003387.1 + 28021 0.69 0.550106
Target:  5'- aCGAGCGCGGCAAgcCGAUCcUCGGcGaGCu -3'
miRNA:   3'- -GUUCGCGCUGUU--GCUAGcAGUC-C-CGc -5'
12870 3' -54.5 NC_003387.1 + 15462 0.69 0.582748
Target:  5'- gAAGCGCGGCGAgGAUgGUCuGcGCa -3'
miRNA:   3'- gUUCGCGCUGUUgCUAgCAGuCcCGc -5'
12870 3' -54.5 NC_003387.1 + 23415 0.69 0.560932
Target:  5'- aCAAGCGCGGCGcCug-CGUCAuugcGGGCa -3'
miRNA:   3'- -GUUCGCGCUGUuGcuaGCAGU----CCCGc -5'
12870 3' -54.5 NC_003387.1 + 6843 0.69 0.550106
Target:  5'- uGGGUGUGAgcGCGAcCGcUCAGGGCGc -3'
miRNA:   3'- gUUCGCGCUguUGCUaGC-AGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 43454 0.77 0.219274
Target:  5'- uCAAGCugcugaccgGCGGCGACGuccUGUCGGGGCGg -3'
miRNA:   3'- -GUUCG---------CGCUGUUGCua-GCAGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 12978 0.69 0.571815
Target:  5'- cCGGGCGgccacCGACGACGAgcuuaaggcgUCGUC-GGGCa -3'
miRNA:   3'- -GUUCGC-----GCUGUUGCU----------AGCAGuCCCGc -5'
12870 3' -54.5 NC_003387.1 + 41140 0.75 0.284133
Target:  5'- -cAGCGCGcCGACGGccgcugcgagUGUCAGGGCGa -3'
miRNA:   3'- guUCGCGCuGUUGCUa---------GCAGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 10908 0.7 0.539346
Target:  5'- -cAGCgGCGACGcgcugcaggacAUGGUCGcgCAGGGCGc -3'
miRNA:   3'- guUCG-CGCUGU-----------UGCUAGCa-GUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 40296 0.69 0.579463
Target:  5'- uCGAG-GaCGACGACGGcaagcgccgccuguUCGUCAaGGGCGa -3'
miRNA:   3'- -GUUCgC-GCUGUUGCU--------------AGCAGU-CCCGC- -5'
12870 3' -54.5 NC_003387.1 + 41853 0.68 0.60473
Target:  5'- -cAGCGgcCGACGGCGGUCGUgAugagcGGGCa -3'
miRNA:   3'- guUCGC--GCUGUUGCUAGCAgU-----CCCGc -5'
12870 3' -54.5 NC_003387.1 + 30061 0.73 0.346269
Target:  5'- aCGAGCGCGcCcuGACGGcCGcCGGGGCGa -3'
miRNA:   3'- -GUUCGCGCuG--UUGCUaGCaGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 13242 0.7 0.518049
Target:  5'- gCAGGC-CGACAGCGAUCugcgcaccaAGGGCa -3'
miRNA:   3'- -GUUCGcGCUGUUGCUAGcag------UCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.