miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12872 3' -49.1 NC_003387.1 + 9300 0.66 0.966812
Target:  5'- cUCGUCGaacuUGCUGUcGGcguugACCUCcgAGCACa -3'
miRNA:   3'- -GGCAGC----ACGACAaCUa----UGGAG--UUGUG- -5'
12872 3' -49.1 NC_003387.1 + 26310 0.66 0.966812
Target:  5'- gCUGUCGUGCUGgcugUGuu-CaaCGACACc -3'
miRNA:   3'- -GGCAGCACGACa---ACuauGgaGUUGUG- -5'
12872 3' -49.1 NC_003387.1 + 14548 0.66 0.966812
Target:  5'- gCCGUUGcGCuUGUacugcUGAaACCUCGACGa -3'
miRNA:   3'- -GGCAGCaCG-ACA-----ACUaUGGAGUUGUg -5'
12872 3' -49.1 NC_003387.1 + 2644 0.66 0.966812
Target:  5'- gUGUCGUGCUc--GGUaACCUCggUGCg -3'
miRNA:   3'- gGCAGCACGAcaaCUA-UGGAGuuGUG- -5'
12872 3' -49.1 NC_003387.1 + 6532 0.66 0.963149
Target:  5'- cCCGUCGcGCUGcaGAUacaugcgaGCCggGACACg -3'
miRNA:   3'- -GGCAGCaCGACaaCUA--------UGGagUUGUG- -5'
12872 3' -49.1 NC_003387.1 + 23591 0.66 0.960822
Target:  5'- aUGUCGgGCuccuauccgcuggggUGUUGAUACCcCAACAg -3'
miRNA:   3'- gGCAGCaCG---------------ACAACUAUGGaGUUGUg -5'
12872 3' -49.1 NC_003387.1 + 42082 0.66 0.955
Target:  5'- gCG-CGUGCUGcgGGUGCC-CGGCuCg -3'
miRNA:   3'- gGCaGCACGACaaCUAUGGaGUUGuG- -5'
12872 3' -49.1 NC_003387.1 + 47466 0.67 0.9505
Target:  5'- -aGUCG-GCUGUUGAguucGCCgUCGGCcaGCg -3'
miRNA:   3'- ggCAGCaCGACAACUa---UGG-AGUUG--UG- -5'
12872 3' -49.1 NC_003387.1 + 33996 0.67 0.945214
Target:  5'- gCgGUCGacgacgagcugccUGCUGUcauacUGCCUCGGCACg -3'
miRNA:   3'- -GgCAGC-------------ACGACAacu--AUGGAGUUGUG- -5'
12872 3' -49.1 NC_003387.1 + 20171 0.67 0.93524
Target:  5'- gCGUCGaggGCgcgGUUGAUgcgcugcugcGCCUC-GCACg -3'
miRNA:   3'- gGCAGCa--CGa--CAACUA----------UGGAGuUGUG- -5'
12872 3' -49.1 NC_003387.1 + 19407 0.67 0.929557
Target:  5'- gCGUCGUGCgggccUUGAUGCCaagggCcuuGCACa -3'
miRNA:   3'- gGCAGCACGac---AACUAUGGa----Gu--UGUG- -5'
12872 3' -49.1 NC_003387.1 + 3399 0.68 0.923572
Target:  5'- cCCGaUCGagcaccUGCUGUcgaUGGUGCC-CGGCAUg -3'
miRNA:   3'- -GGC-AGC------ACGACA---ACUAUGGaGUUGUG- -5'
12872 3' -49.1 NC_003387.1 + 23096 0.68 0.923572
Target:  5'- gCCGUCGcGCgugcgGUgcaccgacUGAUACC-CGACAUa -3'
miRNA:   3'- -GGCAGCaCGa----CA--------ACUAUGGaGUUGUG- -5'
12872 3' -49.1 NC_003387.1 + 50293 0.68 0.917287
Target:  5'- gCCGUCGagaacgGCUGg----GCCgUCAACGCg -3'
miRNA:   3'- -GGCAGCa-----CGACaacuaUGG-AGUUGUG- -5'
12872 3' -49.1 NC_003387.1 + 49956 0.68 0.916642
Target:  5'- cCCGcgaggacUCGggGCguuugUGUUGAcACCUCAACACc -3'
miRNA:   3'- -GGC-------AGCa-CG-----ACAACUaUGGAGUUGUG- -5'
12872 3' -49.1 NC_003387.1 + 36717 0.68 0.910702
Target:  5'- cCCgGUCGaGCUGcccg-GCCUCGACGCc -3'
miRNA:   3'- -GG-CAGCaCGACaacuaUGGAGUUGUG- -5'
12872 3' -49.1 NC_003387.1 + 26698 0.68 0.896642
Target:  5'- gCCGUCG-GCggGUUGGUggcgaugaACC-CGACACc -3'
miRNA:   3'- -GGCAGCaCGa-CAACUA--------UGGaGUUGUG- -5'
12872 3' -49.1 NC_003387.1 + 18349 0.7 0.8477
Target:  5'- uCCGUUGUcGCcGUUGGguuugccgACCUCGACcACg -3'
miRNA:   3'- -GGCAGCA-CGaCAACUa-------UGGAGUUG-UG- -5'
12872 3' -49.1 NC_003387.1 + 481 0.7 0.819795
Target:  5'- gCCGUCagucucgacugGUGCUGUUGAcuCgUCAGCAg -3'
miRNA:   3'- -GGCAG-----------CACGACAACUauGgAGUUGUg -5'
12872 3' -49.1 NC_003387.1 + 51800 0.71 0.758517
Target:  5'- aCCGUCGUGUUaggcGUcuUGAUGCa-CAGCGCg -3'
miRNA:   3'- -GGCAGCACGA----CA--ACUAUGgaGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.