Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12876 | 3' | -59.1 | NC_003387.1 | + | 1694 | 1.07 | 0.000492 |
Target: 5'- uUGCGCGACGCGCUCUGCGCUUGCGUGc -3' miRNA: 3'- -ACGCGCUGCGCGAGACGCGAACGCAC- -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 32215 | 0.77 | 0.08973 |
Target: 5'- aGCGCGACGcCGCgCUGCGCgaGCGc- -3' miRNA: 3'- aCGCGCUGC-GCGaGACGCGaaCGCac -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 3558 | 0.75 | 0.11864 |
Target: 5'- cUGCGCGAC-CGC-CUGCGCgcugGUGUGc -3' miRNA: 3'- -ACGCGCUGcGCGaGACGCGaa--CGCAC- -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 48933 | 0.74 | 0.151861 |
Target: 5'- gUGCGCGuuCGUGCUCagcuucgagGCGC-UGCGUGa -3' miRNA: 3'- -ACGCGCu-GCGCGAGa--------CGCGaACGCAC- -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 20051 | 0.72 | 0.18826 |
Target: 5'- gUGCGCGGCGagguucaGCUCgGCGU--GCGUGa -3' miRNA: 3'- -ACGCGCUGCg------CGAGaCGCGaaCGCAC- -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 1131 | 0.71 | 0.232118 |
Target: 5'- gGCGCacGGUGUGCUCgGCGCcUGCGUGc -3' miRNA: 3'- aCGCG--CUGCGCGAGaCGCGaACGCAC- -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 350 | 0.71 | 0.244351 |
Target: 5'- cGCGUG-CGCGCggucgaUCUGCGCgaGCGg- -3' miRNA: 3'- aCGCGCuGCGCG------AGACGCGaaCGCac -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 44460 | 0.7 | 0.263699 |
Target: 5'- cUGCGCGAgGCGCUgcaCGCccGCGUGa -3' miRNA: 3'- -ACGCGCUgCGCGAgacGCGaaCGCAC- -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 20179 | 0.7 | 0.280059 |
Target: 5'- gGCGCGGuugaUGCGCUgCUGCGCcucgcacggccggGCGUGc -3' miRNA: 3'- aCGCGCU----GCGCGA-GACGCGaa-----------CGCAC- -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 22090 | 0.7 | 0.284272 |
Target: 5'- gGCGCucuCGCGCU-UGUGCUUGCGc- -3' miRNA: 3'- aCGCGcu-GCGCGAgACGCGAACGCac -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 24834 | 0.7 | 0.291407 |
Target: 5'- cGCGUG-UGCGCugUCUGCGgCcgggUGCGUGg -3' miRNA: 3'- aCGCGCuGCGCG--AGACGC-Ga---ACGCAC- -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 18525 | 0.69 | 0.29868 |
Target: 5'- cGCGaCGugGCGCUgUG-GCUUGUGc- -3' miRNA: 3'- aCGC-GCugCGCGAgACgCGAACGCac -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 20658 | 0.69 | 0.313648 |
Target: 5'- aGCGCGAacggGCGCUCggcgGCGacagaCUUGCGa- -3' miRNA: 3'- aCGCGCUg---CGCGAGa---CGC-----GAACGCac -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 37285 | 0.69 | 0.321342 |
Target: 5'- gGCGCcuGGCGCGCUCgucgGCGCgguCGUc -3' miRNA: 3'- aCGCG--CUGCGCGAGa---CGCGaacGCAc -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 895 | 0.69 | 0.321342 |
Target: 5'- cUGCuCGGCGCGCUCguguucGCGCUgUGCa-- -3' miRNA: 3'- -ACGcGCUGCGCGAGa-----CGCGA-ACGcac -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 19641 | 0.69 | 0.329176 |
Target: 5'- cGgGCGACGCgguuacGCUCgcgGCGCUUGgCGc- -3' miRNA: 3'- aCgCGCUGCG------CGAGa--CGCGAAC-GCac -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 18749 | 0.68 | 0.345264 |
Target: 5'- aGCGCaugcacAUGCGCUUUGCGUc-GCGUGu -3' miRNA: 3'- aCGCGc-----UGCGCGAGACGCGaaCGCAC- -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 28903 | 0.68 | 0.353517 |
Target: 5'- gGCGCGGCGCcCUCacguaucugcUGCGCggcgGCGa- -3' miRNA: 3'- aCGCGCUGCGcGAG----------ACGCGaa--CGCac -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 481 | 0.68 | 0.361064 |
Target: 5'- gGCGCGA-GCuGCUCgucgcgaUGCGCgcccGCGUGg -3' miRNA: 3'- aCGCGCUgCG-CGAG-------ACGCGaa--CGCAC- -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 23408 | 0.68 | 0.361909 |
Target: 5'- aGCGCGGCcugGCGCUC-GUGCccGCGg- -3' miRNA: 3'- aCGCGCUG---CGCGAGaCGCGaaCGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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