miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12876 3' -59.1 NC_003387.1 + 32215 0.77 0.08973
Target:  5'- aGCGCGACGcCGCgCUGCGCgaGCGc- -3'
miRNA:   3'- aCGCGCUGC-GCGaGACGCGaaCGCac -5'
12876 3' -59.1 NC_003387.1 + 40849 0.67 0.433863
Target:  5'- gUGCGCGACGCGCUCacCGacacaaUGUGg- -3'
miRNA:   3'- -ACGCGCUGCGCGAGacGCga----ACGCac -5'
12876 3' -59.1 NC_003387.1 + 30866 0.66 0.478812
Target:  5'- gUGCGCGucggcaccuggUGCGCcgguguccacacgCUGCGCUUGCGc- -3'
miRNA:   3'- -ACGCGCu----------GCGCGa------------GACGCGAACGCac -5'
12876 3' -59.1 NC_003387.1 + 48091 0.66 0.482829
Target:  5'- cGgGUGGCGCuGCcgCUGCGCccGCGgUGg -3'
miRNA:   3'- aCgCGCUGCG-CGa-GACGCGaaCGC-AC- -5'
12876 3' -59.1 NC_003387.1 + 24834 0.7 0.291407
Target:  5'- cGCGUG-UGCGCugUCUGCGgCcgggUGCGUGg -3'
miRNA:   3'- aCGCGCuGCGCG--AGACGC-Ga---ACGCAC- -5'
12876 3' -59.1 NC_003387.1 + 18525 0.69 0.29868
Target:  5'- cGCGaCGugGCGCUgUG-GCUUGUGc- -3'
miRNA:   3'- aCGC-GCugCGCGAgACgCGAACGCac -5'
12876 3' -59.1 NC_003387.1 + 37285 0.69 0.321342
Target:  5'- gGCGCcuGGCGCGCUCgucgGCGCgguCGUc -3'
miRNA:   3'- aCGCG--CUGCGCGAGa---CGCGaacGCAc -5'
12876 3' -59.1 NC_003387.1 + 28903 0.68 0.353517
Target:  5'- gGCGCGGCGCcCUCacguaucugcUGCGCggcgGCGa- -3'
miRNA:   3'- aCGCGCUGCGcGAG----------ACGCGaa--CGCac -5'
12876 3' -59.1 NC_003387.1 + 23418 0.68 0.370439
Target:  5'- aGCGCGGCGC---CUGCGUcaUUGCGg- -3'
miRNA:   3'- aCGCGCUGCGcgaGACGCG--AACGCac -5'
12876 3' -59.1 NC_003387.1 + 32495 0.67 0.396838
Target:  5'- gGCGcCGugGUGCgacgaCUGcCGCU-GCGUGc -3'
miRNA:   3'- aCGC-GCugCGCGa----GAC-GCGAaCGCAC- -5'
12876 3' -59.1 NC_003387.1 + 26206 0.68 0.361909
Target:  5'- cGCGCGACGaCGUgcgGCGCUUcauucacaGCGUc -3'
miRNA:   3'- aCGCGCUGC-GCGagaCGCGAA--------CGCAc -5'
12876 3' -59.1 NC_003387.1 + 48933 0.74 0.151861
Target:  5'- gUGCGCGuuCGUGCUCagcuucgagGCGC-UGCGUGa -3'
miRNA:   3'- -ACGCGCu-GCGCGAGa--------CGCGaACGCAC- -5'
12876 3' -59.1 NC_003387.1 + 27161 0.67 0.405903
Target:  5'- aGCGCGuCGCGaagCUGCuGCcccucgGCGUGu -3'
miRNA:   3'- aCGCGCuGCGCga-GACG-CGaa----CGCAC- -5'
12876 3' -59.1 NC_003387.1 + 350 0.71 0.244351
Target:  5'- cGCGUG-CGCGCggucgaUCUGCGCgaGCGg- -3'
miRNA:   3'- aCGCGCuGCGCG------AGACGCGaaCGCac -5'
12876 3' -59.1 NC_003387.1 + 481 0.68 0.361064
Target:  5'- gGCGCGA-GCuGCUCgucgcgaUGCGCgcccGCGUGg -3'
miRNA:   3'- aCGCGCUgCG-CGAG-------ACGCGaa--CGCAC- -5'
12876 3' -59.1 NC_003387.1 + 45859 0.67 0.424418
Target:  5'- cUGCGCGAgcUGCuGCggCUGCGCgccGCGg- -3'
miRNA:   3'- -ACGCGCU--GCG-CGa-GACGCGaa-CGCac -5'
12876 3' -59.1 NC_003387.1 + 43279 0.66 0.481823
Target:  5'- aGCGUgcucaugGACGUGCUCaGCGCggUGC-UGg -3'
miRNA:   3'- aCGCG-------CUGCGCGAGaCGCGa-ACGcAC- -5'
12876 3' -59.1 NC_003387.1 + 44460 0.7 0.263699
Target:  5'- cUGCGCGAgGCGCUgcaCGCccGCGUGa -3'
miRNA:   3'- -ACGCGCUgCGCGAgacGCGaaCGCAC- -5'
12876 3' -59.1 NC_003387.1 + 895 0.69 0.321342
Target:  5'- cUGCuCGGCGCGCUCguguucGCGCUgUGCa-- -3'
miRNA:   3'- -ACGcGCUGCGCGAGa-----CGCGA-ACGcac -5'
12876 3' -59.1 NC_003387.1 + 43115 0.68 0.379104
Target:  5'- aGCGCGACgGCGCg--GCGCc-GCGgUGg -3'
miRNA:   3'- aCGCGCUG-CGCGagaCGCGaaCGC-AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.