Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12876 | 3' | -59.1 | NC_003387.1 | + | 350 | 0.71 | 0.244351 |
Target: 5'- cGCGUG-CGCGCggucgaUCUGCGCgaGCGg- -3' miRNA: 3'- aCGCGCuGCGCG------AGACGCGaaCGCac -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 481 | 0.68 | 0.361064 |
Target: 5'- gGCGCGA-GCuGCUCgucgcgaUGCGCgcccGCGUGg -3' miRNA: 3'- aCGCGCUgCG-CGAG-------ACGCGaa--CGCAC- -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 895 | 0.69 | 0.321342 |
Target: 5'- cUGCuCGGCGCGCUCguguucGCGCUgUGCa-- -3' miRNA: 3'- -ACGcGCUGCGCGAGa-----CGCGA-ACGcac -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 994 | 0.67 | 0.396838 |
Target: 5'- gGCGCcgaccggggucgGAUGCGCUgcggccUUGCGUUUGCGg- -3' miRNA: 3'- aCGCG------------CUGCGCGA------GACGCGAACGCac -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 1131 | 0.71 | 0.232118 |
Target: 5'- gGCGCacGGUGUGCUCgGCGCcUGCGUGc -3' miRNA: 3'- aCGCG--CUGCGCGAGaCGCGaACGCAC- -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 1694 | 1.07 | 0.000492 |
Target: 5'- uUGCGCGACGCGCUCUGCGCUUGCGUGc -3' miRNA: 3'- -ACGCGCUGCGCGAGACGCGAACGCAC- -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 1772 | 0.66 | 0.472816 |
Target: 5'- gGCGCuuCGCGCUg-GCGUucagaucagcuUUGCGUGc -3' miRNA: 3'- aCGCGcuGCGCGAgaCGCG-----------AACGCAC- -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 3558 | 0.75 | 0.11864 |
Target: 5'- cUGCGCGAC-CGC-CUGCGCgcugGUGUGc -3' miRNA: 3'- -ACGCGCUGcGCGaGACGCGaa--CGCAC- -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 4565 | 0.67 | 0.433863 |
Target: 5'- cUGCGCGAcCGCGCgggccUCggugGCGCgcUGCGc- -3' miRNA: 3'- -ACGCGCU-GCGCG-----AGa---CGCGa-ACGCac -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 6677 | 0.66 | 0.462909 |
Target: 5'- gUGCGCugcagauccucGACGaCGCUCgGCGuCUUGCa-- -3' miRNA: 3'- -ACGCG-----------CUGC-GCGAGaCGC-GAACGcac -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 8280 | 0.66 | 0.482829 |
Target: 5'- cGCGCaGCGC-CUCgUGCGCgucgGCGg- -3' miRNA: 3'- aCGCGcUGCGcGAG-ACGCGaa--CGCac -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 18525 | 0.69 | 0.29868 |
Target: 5'- cGCGaCGugGCGCUgUG-GCUUGUGc- -3' miRNA: 3'- aCGC-GCugCGCGAgACgCGAACGCac -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 18749 | 0.68 | 0.345264 |
Target: 5'- aGCGCaugcacAUGCGCUUUGCGUc-GCGUGu -3' miRNA: 3'- aCGCGc-----UGCGCGAGACGCGaaCGCAC- -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 19641 | 0.69 | 0.329176 |
Target: 5'- cGgGCGACGCgguuacGCUCgcgGCGCUUGgCGc- -3' miRNA: 3'- aCgCGCUGCG------CGAGa--CGCGAAC-GCac -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 20051 | 0.72 | 0.18826 |
Target: 5'- gUGCGCGGCGagguucaGCUCgGCGU--GCGUGa -3' miRNA: 3'- -ACGCGCUGCg------CGAGaCGCGaaCGCAC- -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 20179 | 0.7 | 0.280059 |
Target: 5'- gGCGCGGuugaUGCGCUgCUGCGCcucgcacggccggGCGUGc -3' miRNA: 3'- aCGCGCU----GCGCGA-GACGCGaa-----------CGCAC- -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 20658 | 0.69 | 0.313648 |
Target: 5'- aGCGCGAacggGCGCUCggcgGCGacagaCUUGCGa- -3' miRNA: 3'- aCGCGCUg---CGCGAGa---CGC-----GAACGCac -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 22090 | 0.7 | 0.284272 |
Target: 5'- gGCGCucuCGCGCU-UGUGCUUGCGc- -3' miRNA: 3'- aCGCGcu-GCGCGAgACGCGAACGCac -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 22510 | 0.66 | 0.462909 |
Target: 5'- --gGCGGCGCGCUC-GaCGUcgGCGUa -3' miRNA: 3'- acgCGCUGCGCGAGaC-GCGaaCGCAc -5' |
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12876 | 3' | -59.1 | NC_003387.1 | + | 23408 | 0.68 | 0.361909 |
Target: 5'- aGCGCGGCcugGCGCUC-GUGCccGCGg- -3' miRNA: 3'- aCGCGCUG---CGCGAGaCGCGaaCGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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