miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12903 5' -56.3 NC_003387.1 + 9253 1.09 0.000665
Target:  5'- cACCACAUUCACACCAGGGCACGCCAGg -3'
miRNA:   3'- -UGGUGUAAGUGUGGUCCCGUGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 12307 0.82 0.057315
Target:  5'- uGCaCGCucucgcCACGCCGGGGCACGCCGGg -3'
miRNA:   3'- -UG-GUGuaa---GUGUGGUCCCGUGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 50844 0.77 0.135515
Target:  5'- gGCCGCGggUCugGCC-GGGCAgCGCCAGc -3'
miRNA:   3'- -UGGUGUa-AGugUGGuCCCGU-GCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 43069 0.76 0.175723
Target:  5'- cACCGCcccgagggcuggCACACCAGGGUgacggGCGCCGGg -3'
miRNA:   3'- -UGGUGuaa---------GUGUGGUCCCG-----UGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 37495 0.75 0.18859
Target:  5'- gACCGuCAUUCACugCAGGG-ACGaCCGGa -3'
miRNA:   3'- -UGGU-GUAAGUGugGUCCCgUGC-GGUC- -5'
12903 5' -56.3 NC_003387.1 + 49770 0.75 0.18859
Target:  5'- -gCACGUUCAUGCCGGGcuGCACGCuCAGc -3'
miRNA:   3'- ugGUGUAAGUGUGGUCC--CGUGCG-GUC- -5'
12903 5' -56.3 NC_003387.1 + 14100 0.74 0.215671
Target:  5'- cGCCGgAUUCuCcUCGGGGUACGCCGGg -3'
miRNA:   3'- -UGGUgUAAGuGuGGUCCCGUGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 22200 0.73 0.259114
Target:  5'- gUCGCcgUCGuauugcCGCCAGGGC-CGCCGGg -3'
miRNA:   3'- uGGUGuaAGU------GUGGUCCCGuGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 48382 0.73 0.259114
Target:  5'- aACCACAUUCGCaagcggGCC-GGGCGCaGCCuGg -3'
miRNA:   3'- -UGGUGUAAGUG------UGGuCCCGUG-CGGuC- -5'
12903 5' -56.3 NC_003387.1 + 25261 0.73 0.259114
Target:  5'- uGCCGCGgcggCgGCGCCGGGGCcaccGCGCCGa -3'
miRNA:   3'- -UGGUGUaa--G-UGUGGUCCCG----UGCGGUc -5'
12903 5' -56.3 NC_003387.1 + 33052 0.73 0.265874
Target:  5'- cACCGugc-CGCACCGGGuGCGCGCCAa -3'
miRNA:   3'- -UGGUguaaGUGUGGUCC-CGUGCGGUc -5'
12903 5' -56.3 NC_003387.1 + 15756 0.72 0.287009
Target:  5'- aGCCACGcgccgggaUUCAuCACCugcguGGGCaACGCCAGc -3'
miRNA:   3'- -UGGUGU--------AAGU-GUGGu----CCCG-UGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 24223 0.72 0.309444
Target:  5'- gACCGCGUUgGCGuuguCCucGGGCAgGCCGGg -3'
miRNA:   3'- -UGGUGUAAgUGU----GGu-CCCGUgCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 51116 0.71 0.333191
Target:  5'- cCCACAcgCGCccggccgaacauGCCAGGGCGCGUCuGa -3'
miRNA:   3'- uGGUGUaaGUG------------UGGUCCCGUGCGGuC- -5'
12903 5' -56.3 NC_003387.1 + 3732 0.71 0.341398
Target:  5'- gGCCGC--UCA-GCCGGGGCACgaGCCGGu -3'
miRNA:   3'- -UGGUGuaAGUgUGGUCCCGUG--CGGUC- -5'
12903 5' -56.3 NC_003387.1 + 43787 0.71 0.355683
Target:  5'- uGCCGCcgUCgaGCACCuggcGGGCgccgucggcgauccACGCCAGg -3'
miRNA:   3'- -UGGUGuaAG--UGUGGu---CCCG--------------UGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 34090 0.7 0.375671
Target:  5'- gUCGCGca-GCGCCAGGGCGCGgCAc -3'
miRNA:   3'- uGGUGUaagUGUGGUCCCGUGCgGUc -5'
12903 5' -56.3 NC_003387.1 + 22440 0.7 0.384594
Target:  5'- aACCACAcu-GCGCCGGGuGCGCcuggGCCAGc -3'
miRNA:   3'- -UGGUGUaagUGUGGUCC-CGUG----CGGUC- -5'
12903 5' -56.3 NC_003387.1 + 48931 0.7 0.393657
Target:  5'- cCgGCug-CGCACCAGGGCgugcACGCCGu -3'
miRNA:   3'- uGgUGuaaGUGUGGUCCCG----UGCGGUc -5'
12903 5' -56.3 NC_003387.1 + 42147 0.69 0.412193
Target:  5'- cCCGCAgcacgCGCGCCAGGucguaCACGCCGc -3'
miRNA:   3'- uGGUGUaa---GUGUGGUCCc----GUGCGGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.