miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12903 5' -56.3 NC_003387.1 + 629 0.69 0.460799
Target:  5'- aGCCGC---CGCGUCAGGGCA-GCCAGa -3'
miRNA:   3'- -UGGUGuaaGUGUGGUCCCGUgCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 2444 0.69 0.449841
Target:  5'- aACCGCAUggacgCGCGCCAGGccgagguGCAcCGCCc- -3'
miRNA:   3'- -UGGUGUAa----GUGUGGUCC-------CGU-GCGGuc -5'
12903 5' -56.3 NC_003387.1 + 3732 0.71 0.341398
Target:  5'- gGCCGC--UCA-GCCGGGGCACgaGCCGGu -3'
miRNA:   3'- -UGGUGuaAGUgUGGUCCCGUG--CGGUC- -5'
12903 5' -56.3 NC_003387.1 + 7285 0.66 0.587869
Target:  5'- gUgACGUUCACGcCCGGcGGUAacuCGCCGGg -3'
miRNA:   3'- uGgUGUAAGUGU-GGUC-CCGU---GCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 7905 0.68 0.469868
Target:  5'- uCCGCcugCGCGCC-GGGCAccucggcCGCCAGg -3'
miRNA:   3'- uGGUGuaaGUGUGGuCCCGU-------GCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 8438 0.68 0.481075
Target:  5'- cACCGCGgccugCAUGCCgaacAGcGGCACGUCGGg -3'
miRNA:   3'- -UGGUGUaa---GUGUGG----UC-CCGUGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 9253 1.09 0.000665
Target:  5'- cACCACAUUCACACCAGGGCACGCCAGg -3'
miRNA:   3'- -UGGUGUAAGUGUGGUCCCGUGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 10036 0.67 0.543192
Target:  5'- aGCCGaag-CGCGCCgAGGGCGCggugucgGCCGGu -3'
miRNA:   3'- -UGGUguaaGUGUGG-UCCCGUG-------CGGUC- -5'
12903 5' -56.3 NC_003387.1 + 11452 0.66 0.643134
Target:  5'- cGCUGCAgcUCGcCGCCGGGGCGCucaaguucaugGCCGa -3'
miRNA:   3'- -UGGUGUa-AGU-GUGGUCCCGUG-----------CGGUc -5'
12903 5' -56.3 NC_003387.1 + 12089 0.69 0.420709
Target:  5'- cACCGCAUgCGCcgugucgACCAGGcCGCGCCAc -3'
miRNA:   3'- -UGGUGUAaGUG-------UGGUCCcGUGCGGUc -5'
12903 5' -56.3 NC_003387.1 + 12307 0.82 0.057315
Target:  5'- uGCaCGCucucgcCACGCCGGGGCACGCCGGg -3'
miRNA:   3'- -UG-GUGuaa---GUGUGGUCCCGUGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 12420 0.66 0.632061
Target:  5'- cGCCGCugugggagCugAUUAGGGCGCuGCCGa -3'
miRNA:   3'- -UGGUGuaa-----GugUGGUCCCGUG-CGGUc -5'
12903 5' -56.3 NC_003387.1 + 12953 0.68 0.481075
Target:  5'- cGCuCACGUUgACGCCAGacggcaaagacaGGCcCGCCGGu -3'
miRNA:   3'- -UG-GUGUAAgUGUGGUC------------CCGuGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 13245 0.67 0.576892
Target:  5'- gGCCgACAgcgaucugCGCACCaAGGGCAagGCCAc -3'
miRNA:   3'- -UGG-UGUaa------GUGUGG-UCCCGUg-CGGUc -5'
12903 5' -56.3 NC_003387.1 + 13502 0.66 0.609926
Target:  5'- uGCCGagguaGUUCACACCGGcGaGCGCCGa -3'
miRNA:   3'- -UGGUg----UAAGUGUGGUCcCgUGCGGUc -5'
12903 5' -56.3 NC_003387.1 + 14100 0.74 0.215671
Target:  5'- cGCCGgAUUCuCcUCGGGGUACGCCGGg -3'
miRNA:   3'- -UGGUgUAAGuGuGGUCCCGUGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 15756 0.72 0.287009
Target:  5'- aGCCACGcgccgggaUUCAuCACCugcguGGGCaACGCCAGc -3'
miRNA:   3'- -UGGUGU--------AAGU-GUGGu----CCCG-UGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 16415 0.68 0.481075
Target:  5'- cAUCGCGUUCACAgauCCGuuGCGCGCCAu -3'
miRNA:   3'- -UGGUGUAAGUGU---GGUccCGUGCGGUc -5'
12903 5' -56.3 NC_003387.1 + 17046 0.67 0.54427
Target:  5'- cCCGCc--CGCGCCAGGugaaACGCCAGc -3'
miRNA:   3'- uGGUGuaaGUGUGGUCCcg--UGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 17263 0.68 0.501775
Target:  5'- gGCCACuUUCGCGCCgucgccgcccaGGcGGCGCaCCAGc -3'
miRNA:   3'- -UGGUGuAAGUGUGG-----------UC-CCGUGcGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.