miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12903 5' -56.3 NC_003387.1 + 9253 1.09 0.000665
Target:  5'- cACCACAUUCACACCAGGGCACGCCAGg -3'
miRNA:   3'- -UGGUGUAAGUGUGGUCCCGUGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 50701 0.67 0.565961
Target:  5'- cCCugAU--GCGCCuGGGCGCGCacaAGg -3'
miRNA:   3'- uGGugUAagUGUGGuCCCGUGCGg--UC- -5'
12903 5' -56.3 NC_003387.1 + 7285 0.66 0.587869
Target:  5'- gUgACGUUCACGcCCGGcGGUAacuCGCCGGg -3'
miRNA:   3'- uGgUGUAAGUGU-GGUC-CCGU---GCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 11452 0.66 0.643134
Target:  5'- cGCUGCAgcUCGcCGCCGGGGCGCucaaguucaugGCCGa -3'
miRNA:   3'- -UGGUGUa-AGU-GUGGUCCCGUG-----------CGGUc -5'
12903 5' -56.3 NC_003387.1 + 33052 0.73 0.265874
Target:  5'- cACCGugc-CGCACCGGGuGCGCGCCAa -3'
miRNA:   3'- -UGGUguaaGUGUGGUCC-CGUGCGGUc -5'
12903 5' -56.3 NC_003387.1 + 51116 0.71 0.333191
Target:  5'- cCCACAcgCGCccggccgaacauGCCAGGGCGCGUCuGa -3'
miRNA:   3'- uGGUGUaaGUG------------UGGUCCCGUGCGGuC- -5'
12903 5' -56.3 NC_003387.1 + 31018 0.69 0.440984
Target:  5'- gGCCgaGCGU--GCGCCGGGGCgGCgGCCAGc -3'
miRNA:   3'- -UGG--UGUAagUGUGGUCCCG-UG-CGGUC- -5'
12903 5' -56.3 NC_003387.1 + 2444 0.69 0.449841
Target:  5'- aACCGCAUggacgCGCGCCAGGccgagguGCAcCGCCc- -3'
miRNA:   3'- -UGGUGUAa----GUGUGGUCC-------CGU-GCGGuc -5'
12903 5' -56.3 NC_003387.1 + 37919 0.68 0.501775
Target:  5'- uGCC-CGguggcUCgGCACCGccGGGCACGCCAa -3'
miRNA:   3'- -UGGuGUa----AG-UGUGGU--CCCGUGCGGUc -5'
12903 5' -56.3 NC_003387.1 + 30564 0.67 0.565961
Target:  5'- cGCCGCGgccgguaCGCGCCGugccgcgagugcGGGUACGUCGGc -3'
miRNA:   3'- -UGGUGUaa-----GUGUGGU------------CCCGUGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 45730 0.67 0.548588
Target:  5'- cGCgACAUUCugcgGCGCCugcacaagugguccgAGGGCGCGCUg- -3'
miRNA:   3'- -UGgUGUAAG----UGUGG---------------UCCCGUGCGGuc -5'
12903 5' -56.3 NC_003387.1 + 16415 0.68 0.481075
Target:  5'- cAUCGCGUUCACAgauCCGuuGCGCGCCAu -3'
miRNA:   3'- -UGGUGUAAGUGU---GGUccCGUGCGGUc -5'
12903 5' -56.3 NC_003387.1 + 43069 0.76 0.175723
Target:  5'- cACCGCcccgagggcuggCACACCAGGGUgacggGCGCCGGg -3'
miRNA:   3'- -UGGUGuaa---------GUGUGGUCCCG-----UGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 19665 0.67 0.565961
Target:  5'- aACCGCAUUgUGCACCuGGGCGuCGaCGGc -3'
miRNA:   3'- -UGGUGUAA-GUGUGGuCCCGU-GCgGUC- -5'
12903 5' -56.3 NC_003387.1 + 37495 0.75 0.18859
Target:  5'- gACCGuCAUUCACugCAGGG-ACGaCCGGa -3'
miRNA:   3'- -UGGU-GUAAGUGugGUCCCgUGC-GGUC- -5'
12903 5' -56.3 NC_003387.1 + 22143 0.69 0.450832
Target:  5'- gGCgACGUUCACuggCGGcGGCACGCuCAGc -3'
miRNA:   3'- -UGgUGUAAGUGug-GUC-CCGUGCG-GUC- -5'
12903 5' -56.3 NC_003387.1 + 47712 0.67 0.565961
Target:  5'- aACCACAUg-ACACCGGcGCAgGCCc- -3'
miRNA:   3'- -UGGUGUAagUGUGGUCcCGUgCGGuc -5'
12903 5' -56.3 NC_003387.1 + 13245 0.67 0.576892
Target:  5'- gGCCgACAgcgaucugCGCACCaAGGGCAagGCCAc -3'
miRNA:   3'- -UGG-UGUaa------GUGUGG-UCCCGUg-CGGUc -5'
12903 5' -56.3 NC_003387.1 + 48382 0.73 0.259114
Target:  5'- aACCACAUUCGCaagcggGCC-GGGCGCaGCCuGg -3'
miRNA:   3'- -UGGUGUAAGUG------UGGuCCCGUG-CGGuC- -5'
12903 5' -56.3 NC_003387.1 + 49276 0.69 0.412193
Target:  5'- gACCGCGUgaaggUCGC-CCAGGugcucgccgaGCACGCCGa -3'
miRNA:   3'- -UGGUGUA-----AGUGuGGUCC----------CGUGCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.