miRNA display CGI


Results 21 - 40 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12917 3' -53.2 NC_003387.1 + 33747 0.78 0.251299
Target:  5'- gCUCGUCGAUG-Cu-CGCCGGGGUGCCg -3'
miRNA:   3'- -GGGCAGUUGCuGuuGUGGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 47008 0.78 0.251299
Target:  5'- gCCgGUCAGCGACGACGC--GGGCacGCCc -3'
miRNA:   3'- -GGgCAGUUGCUGUUGUGguUCCG--CGG- -5'
12917 3' -53.2 NC_003387.1 + 46515 0.77 0.271441
Target:  5'- gCUCGcUCGGCGACuGCACCAAcGGCGgCg -3'
miRNA:   3'- -GGGC-AGUUGCUGuUGUGGUU-CCGCgG- -5'
12917 3' -53.2 NC_003387.1 + 48199 0.77 0.271441
Target:  5'- gCCCGcacCGGCGGCGGCgGCCGAGGUGaCCc -3'
miRNA:   3'- -GGGCa--GUUGCUGUUG-UGGUUCCGC-GG- -5'
12917 3' -53.2 NC_003387.1 + 9036 0.77 0.271441
Target:  5'- gCCGUCGGCGAUccACGCCAGGaucGCGUCg -3'
miRNA:   3'- gGGCAGUUGCUGu-UGUGGUUC---CGCGG- -5'
12917 3' -53.2 NC_003387.1 + 6027 0.77 0.271441
Target:  5'- -gCGUcCAGCGGCAcgagguGCGgCAGGGCGCCg -3'
miRNA:   3'- ggGCA-GUUGCUGU------UGUgGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 34391 0.77 0.278438
Target:  5'- aCCGgcgggcaCGACGGCcACGCCGuugccGGGCGCCa -3'
miRNA:   3'- gGGCa------GUUGCUGuUGUGGU-----UCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 4836 0.77 0.278438
Target:  5'- gCuuGUCGGCGACGugcACGCCGAgauGGCgGCCg -3'
miRNA:   3'- -GggCAGUUGCUGU---UGUGGUU---CCG-CGG- -5'
12917 3' -53.2 NC_003387.1 + 11077 0.77 0.285578
Target:  5'- gUCGUCGACGuaccGCAGCGCCuuagcuuGGGCGCg -3'
miRNA:   3'- gGGCAGUUGC----UGUUGUGGu------UCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 15966 0.76 0.292861
Target:  5'- gCCGUCGcugACGGUGACGCCcAGGCGCUc -3'
miRNA:   3'- gGGCAGU---UGCUGUUGUGGuUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 44706 0.76 0.29954
Target:  5'- gCCgCGUCggUGACGuucguuaugccucGCccgGCCGGGGCGCCg -3'
miRNA:   3'- -GG-GCAGuuGCUGU-------------UG---UGGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 50536 0.76 0.307861
Target:  5'- gCCGcCAcAUGuCGGCgACCAAGGCGCCg -3'
miRNA:   3'- gGGCaGU-UGCuGUUG-UGGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 43074 0.76 0.314801
Target:  5'- cCCCGagGGCuGGC-ACACCAgggugacGGGCGCCg -3'
miRNA:   3'- -GGGCagUUG-CUGuUGUGGU-------UCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 31100 0.76 0.315579
Target:  5'- aUCCGaUC-ACGACGcacccccgaGCGCCAgguGGGCGCCg -3'
miRNA:   3'- -GGGC-AGuUGCUGU---------UGUGGU---UCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 18180 0.76 0.323442
Target:  5'- aCCCGcUGACGAuCGGCugCGAGGUGCg -3'
miRNA:   3'- -GGGCaGUUGCU-GUUGugGUUCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 51306 0.76 0.323442
Target:  5'- gCUCGUCGGCGGCGGCGCCucgcacaacuucGAGcGCGaCCc -3'
miRNA:   3'- -GGGCAGUUGCUGUUGUGG------------UUC-CGC-GG- -5'
12917 3' -53.2 NC_003387.1 + 17124 0.75 0.330642
Target:  5'- gCCGUaGGCGAucgcugugucgacCAGCucgGCCAGGGCGCCg -3'
miRNA:   3'- gGGCAgUUGCU-------------GUUG---UGGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 3122 0.75 0.331449
Target:  5'- gCCGcCAGCGGCAGCACUGccAGGCcaccGCCc -3'
miRNA:   3'- gGGCaGUUGCUGUUGUGGU--UCCG----CGG- -5'
12917 3' -53.2 NC_003387.1 + 18372 0.75 0.331449
Target:  5'- -aCGUCAaccucuacaACGACGGCAuCCucGGCGCCu -3'
miRNA:   3'- ggGCAGU---------UGCUGUUGU-GGuuCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 8254 0.75 0.331449
Target:  5'- aCCCGUCAcgcggGCGuGCAGCGCCucgcgcaGCGCCu -3'
miRNA:   3'- -GGGCAGU-----UGC-UGUUGUGGuuc----CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.