Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12924 | 5' | -56 | NC_003387.1 | + | 50894 | 0.66 | 0.667911 |
Target: 5'- cGUCG-GGgcGUCGaCGUCGAGG-GCa -3' miRNA: 3'- -CAGCaCCuuUAGCaGCGGCUCCgCGa -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 12805 | 0.66 | 0.66791 |
Target: 5'- cUCGcaacGAccgcAGUCGUCGCCGGGGCaGUUg -3' miRNA: 3'- cAGCac--CU----UUAGCAGCGGCUCCG-CGA- -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 30424 | 0.66 | 0.656977 |
Target: 5'- uGUCGgGuGAAAcCGagGCCGAGGCGgUg -3' miRNA: 3'- -CAGCaC-CUUUaGCagCGGCUCCGCgA- -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 13650 | 0.66 | 0.64602 |
Target: 5'- cGUCGgcGGcgGcUCgGUCGCCGAgGGCGCc -3' miRNA: 3'- -CAGCa-CCuuU-AG-CAGCGGCU-CCGCGa -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 47927 | 0.67 | 0.624079 |
Target: 5'- cGUUGUGGc---CGUCGCCGcGGGCcuGCg -3' miRNA: 3'- -CAGCACCuuuaGCAGCGGC-UCCG--CGa -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 19602 | 0.67 | 0.612019 |
Target: 5'- -gUGUGGcAGUCGUuccuugaCGCCGcgaaGGGCGCg -3' miRNA: 3'- caGCACCuUUAGCA-------GCGGC----UCCGCGa -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 43693 | 0.67 | 0.602167 |
Target: 5'- -gCGUGGA-----UCGCCGAcGGCGCc -3' miRNA: 3'- caGCACCUuuagcAGCGGCU-CCGCGa -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 29694 | 0.68 | 0.558715 |
Target: 5'- -aCGUGGc---CGagGUCGAGGCGCUc -3' miRNA: 3'- caGCACCuuuaGCagCGGCUCCGCGA- -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 22681 | 0.68 | 0.558714 |
Target: 5'- cUCGUGGGcggUGUCGaCGGcGGCGCUg -3' miRNA: 3'- cAGCACCUuuaGCAGCgGCU-CCGCGA- -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 11442 | 0.68 | 0.555487 |
Target: 5'- cUCGUGcccgcgcugcagcUCGcCGCCGGGGCGCUc -3' miRNA: 3'- cAGCACcuuu---------AGCaGCGGCUCCGCGA- -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 31018 | 0.68 | 0.537306 |
Target: 5'- gGUCGgcgcGGGccgCGcUCGCCGAGGCGg- -3' miRNA: 3'- -CAGCa---CCUuuaGC-AGCGGCUCCGCga -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 6218 | 0.68 | 0.525653 |
Target: 5'- -aCGUGGGccaaccgGAcccUCGUCGCCGAGGaaauCGCc -3' miRNA: 3'- caGCACCU-------UU---AGCAGCGGCUCC----GCGa -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 51417 | 0.69 | 0.495414 |
Target: 5'- cGUCGUcGAcGUCGcccgccagggCGUCGAGGCGCa -3' miRNA: 3'- -CAGCAcCUuUAGCa---------GCGGCUCCGCGa -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 26630 | 0.69 | 0.485169 |
Target: 5'- aGUCGaucgcgugcUGGAAAUaCGUcaCGCCG-GGCGCa -3' miRNA: 3'- -CAGC---------ACCUUUA-GCA--GCGGCuCCGCGa -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 21562 | 0.69 | 0.475026 |
Target: 5'- cGUCGUGcAGAcCGUgGCCcAGGCGCg -3' miRNA: 3'- -CAGCACcUUUaGCAgCGGcUCCGCGa -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 6448 | 0.69 | 0.474018 |
Target: 5'- gGUCGUGGGcggCGUCGCCaacGAguccgacauugucGGCGCg -3' miRNA: 3'- -CAGCACCUuuaGCAGCGG---CU-------------CCGCGa -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 15491 | 0.7 | 0.455066 |
Target: 5'- cUCGUcGAAAUCGUCGCCcacGGcGGCGUUu -3' miRNA: 3'- cAGCAcCUUUAGCAGCGG---CU-CCGCGA- -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 25975 | 0.7 | 0.455066 |
Target: 5'- aUCGcUGGggGUaugcCGcUCGCCGGGGuCGCg -3' miRNA: 3'- cAGC-ACCuuUA----GC-AGCGGCUCC-GCGa -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 11435 | 0.7 | 0.426001 |
Target: 5'- cGUCGaGGuuucgcUCGUCGCCGucgaggGGGCGCa -3' miRNA: 3'- -CAGCaCCuuu---AGCAGCGGC------UCCGCGa -5' |
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12924 | 5' | -56 | NC_003387.1 | + | 9674 | 0.7 | 0.40725 |
Target: 5'- -cCGUGGAAugGUU-UCGUCGAGGCGUg -3' miRNA: 3'- caGCACCUU--UAGcAGCGGCUCCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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