miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12927 5' -54.2 NC_003387.1 + 24138 0.66 0.775584
Target:  5'- -cGG-CGGUGUugagcuUGAGGGCGUcgUCGa -3'
miRNA:   3'- uaCCaGCCGCA------GCUCCCGUAaaAGCg -5'
12927 5' -54.2 NC_003387.1 + 10011 0.7 0.53555
Target:  5'- -aGGUCGGCGUUGccGGUAUcggUCGg -3'
miRNA:   3'- uaCCAGCCGCAGCucCCGUAaa-AGCg -5'
12927 5' -54.2 NC_003387.1 + 22051 0.7 0.493035
Target:  5'- -cGGUgcgacCGG-GUCGGGGGCGUUUcUCGUu -3'
miRNA:   3'- uaCCA-----GCCgCAGCUCCCGUAAA-AGCG- -5'
12927 5' -54.2 NC_003387.1 + 20166 0.71 0.482645
Target:  5'- --cGagGGCGUCGAGGGCGcggUUgaugCGCu -3'
miRNA:   3'- uacCagCCGCAGCUCCCGUa--AAa---GCG- -5'
12927 5' -54.2 NC_003387.1 + 22683 0.71 0.482645
Target:  5'- cGUGGgCGGUGUCGAcGGCGg---CGCu -3'
miRNA:   3'- -UACCaGCCGCAGCUcCCGUaaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 30260 0.71 0.46219
Target:  5'- -gGGUCGGCGcCGGggucGGGCAgccacUCGUa -3'
miRNA:   3'- uaCCAGCCGCaGCU----CCCGUaaa--AGCG- -5'
12927 5' -54.2 NC_003387.1 + 44858 0.71 0.46219
Target:  5'- -aGGUCGGUgccguagccGUCGGGGGCGUcggCGa -3'
miRNA:   3'- uaCCAGCCG---------CAGCUCCCGUAaaaGCg -5'
12927 5' -54.2 NC_003387.1 + 16063 0.73 0.362226
Target:  5'- -aGGUCGGCGagccggugaugccacUCGGGGGCGccgUCGg -3'
miRNA:   3'- uaCCAGCCGC---------------AGCUCCCGUaaaAGCg -5'
12927 5' -54.2 NC_003387.1 + 49197 0.73 0.358759
Target:  5'- cUGGggCGGCGgCGGGGGCAcUggCGCc -3'
miRNA:   3'- uACCa-GCCGCaGCUCCCGUaAaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 4147 0.69 0.546387
Target:  5'- -gGGUCGGCGagGcGGGCGUcgaUGCa -3'
miRNA:   3'- uaCCAGCCGCagCuCCCGUAaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 1753 0.69 0.590344
Target:  5'- -cGGccgcuaUCGGC-UCGGGGGCGc-UUCGCg -3'
miRNA:   3'- uaCC------AGCCGcAGCUCCCGUaaAAGCG- -5'
12927 5' -54.2 NC_003387.1 + 34805 0.68 0.657159
Target:  5'- gGUGuuGUCGuaGUCGGGGGCGUcgagaaugUUCGUc -3'
miRNA:   3'- -UAC--CAGCcgCAGCUCCCGUAa-------AAGCG- -5'
12927 5' -54.2 NC_003387.1 + 16190 0.66 0.773548
Target:  5'- -aGG-CGGCGUCGgugcugucGGGGCucagccugCGCu -3'
miRNA:   3'- uaCCaGCCGCAGC--------UCCCGuaaaa---GCG- -5'
12927 5' -54.2 NC_003387.1 + 34519 0.66 0.765343
Target:  5'- -cGGUCGucGCGUcgcCGAGGcGCAcc-UCGCa -3'
miRNA:   3'- uaCCAGC--CGCA---GCUCC-CGUaaaAGCG- -5'
12927 5' -54.2 NC_003387.1 + 52586 0.66 0.765343
Target:  5'- -cGG-CGGCGcggaucgCGAGGGCGac--CGCa -3'
miRNA:   3'- uaCCaGCCGCa------GCUCCCGUaaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 11276 0.66 0.765343
Target:  5'- -aGGgCGGCGUC-AGGGCcg---CGCc -3'
miRNA:   3'- uaCCaGCCGCAGcUCCCGuaaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 25109 0.66 0.744451
Target:  5'- -cGGUCGGUGUCGucGaGGCcc--UCGUa -3'
miRNA:   3'- uaCCAGCCGCAGCu-C-CCGuaaaAGCG- -5'
12927 5' -54.2 NC_003387.1 + 28157 0.66 0.733823
Target:  5'- --cGUCGGUGUUGAGcccgaacccGGCGacagUUUCGCu -3'
miRNA:   3'- uacCAGCCGCAGCUC---------CCGUa---AAAGCG- -5'
12927 5' -54.2 NC_003387.1 + 2357 0.66 0.723091
Target:  5'- --cGUCGGCGUCGAGcGCcacguaCGCg -3'
miRNA:   3'- uacCAGCCGCAGCUCcCGuaaaa-GCG- -5'
12927 5' -54.2 NC_003387.1 + 18407 0.66 0.723091
Target:  5'- -gGGUCGGC--CGcGGGCAg---CGCg -3'
miRNA:   3'- uaCCAGCCGcaGCuCCCGUaaaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.