miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12929 3' -59.1 NC_003387.1 + 51982 0.69 0.379912
Target:  5'- uGGCCGACCGCaucCUGGCgcaccugCCCGAccuGUCGg -3'
miRNA:   3'- -CCGGUUGGCGc--GGCUG-------GGGCU---UAGCa -5'
12929 3' -59.1 NC_003387.1 + 51855 0.7 0.29426
Target:  5'- cGUCGcuGCCGCGgUGGCCCCGGugAUCGc -3'
miRNA:   3'- cCGGU--UGGCGCgGCUGGGGCU--UAGCa -5'
12929 3' -59.1 NC_003387.1 + 51721 0.7 0.323836
Target:  5'- aGGCCGcAgCGCauCCGACCCCG-GUCGa -3'
miRNA:   3'- -CCGGU-UgGCGc-GGCUGGGGCuUAGCa -5'
12929 3' -59.1 NC_003387.1 + 51420 0.67 0.444014
Target:  5'- cGCCuGCgGCGCCG-CCUCGAacugcgccgGUCGa -3'
miRNA:   3'- cCGGuUGgCGCGGCuGGGGCU---------UAGCa -5'
12929 3' -59.1 NC_003387.1 + 51104 0.71 0.253911
Target:  5'- aGCCAGCaCGCGCCGACCga-AAUCGc -3'
miRNA:   3'- cCGGUUG-GCGCGGCUGGggcUUAGCa -5'
12929 3' -59.1 NC_003387.1 + 50445 0.69 0.339435
Target:  5'- cGCCAGCgaggacgaCGUcgaGCCGACCCCGGcccgcgagGUCGUc -3'
miRNA:   3'- cCGGUUG--------GCG---CGGCUGGGGCU--------UAGCA- -5'
12929 3' -59.1 NC_003387.1 + 50189 0.66 0.543529
Target:  5'- cGG-CGACCGCGugcggaacaCCGGCCCCucaucAGUCGg -3'
miRNA:   3'- -CCgGUUGGCGC---------GGCUGGGGc----UUAGCa -5'
12929 3' -59.1 NC_003387.1 + 50141 0.71 0.287203
Target:  5'- cGGCCAG--GCGUCGACCgaCGggUCGg -3'
miRNA:   3'- -CCGGUUggCGCGGCUGGg-GCuuAGCa -5'
12929 3' -59.1 NC_003387.1 + 49598 0.7 0.331568
Target:  5'- uGGCCuggcagugcuGCCGCuGgCGGCCCCGAuuuacgagccgGUCGg -3'
miRNA:   3'- -CCGGu---------UGGCG-CgGCUGGGGCU-----------UAGCa -5'
12929 3' -59.1 NC_003387.1 + 48892 0.7 0.331568
Target:  5'- cGCCuACCGCGC--GCCCUGAcgAUCGUu -3'
miRNA:   3'- cCGGuUGGCGCGgcUGGGGCU--UAGCA- -5'
12929 3' -59.1 NC_003387.1 + 48762 0.68 0.389432
Target:  5'- cGCCgAGCCuuGCaGCgCGACCaCCGggUCGUu -3'
miRNA:   3'- cCGG-UUGG--CG-CG-GCUGG-GGCuuAGCA- -5'
12929 3' -59.1 NC_003387.1 + 47579 0.69 0.339435
Target:  5'- -aCCGACCgGCGCCGagcGCCCCucGUCGc -3'
miRNA:   3'- ccGGUUGG-CGCGGC---UGGGGcuUAGCa -5'
12929 3' -59.1 NC_003387.1 + 47166 0.67 0.463143
Target:  5'- gGGC--ACCGCGgUGGCCCUGGugGUCGc -3'
miRNA:   3'- -CCGguUGGCGCgGCUGGGGCU--UAGCa -5'
12929 3' -59.1 NC_003387.1 + 46248 0.68 0.416176
Target:  5'- cGGUUggUCGCGCCGACaaugUCGGAcUCGUu -3'
miRNA:   3'- -CCGGuuGGCGCGGCUGg---GGCUU-AGCA- -5'
12929 3' -59.1 NC_003387.1 + 45385 0.72 0.218221
Target:  5'- cGGUUAGCUGCGcCCGGCcgCCCGAgccgAUCGUg -3'
miRNA:   3'- -CCGGUUGGCGC-GGCUG--GGGCU----UAGCA- -5'
12929 3' -59.1 NC_003387.1 + 45261 0.7 0.316239
Target:  5'- cGGCUGgaauggaucGCCaCGCCGACCCCG--UCGg -3'
miRNA:   3'- -CCGGU---------UGGcGCGGCUGGGGCuuAGCa -5'
12929 3' -59.1 NC_003387.1 + 44412 0.7 0.329234
Target:  5'- gGGCCGuagugaugcGCCGCGCCGgugauccacacgucGCCCuCGGG-CGUg -3'
miRNA:   3'- -CCGGU---------UGGCGCGGC--------------UGGG-GCUUaGCA- -5'
12929 3' -59.1 NC_003387.1 + 43790 0.66 0.522928
Target:  5'- cGCCGugcAUCGCGgUGGCCUCGGA-CGUg -3'
miRNA:   3'- cCGGU---UGGCGCgGCUGGGGCUUaGCA- -5'
12929 3' -59.1 NC_003387.1 + 43002 0.72 0.218221
Target:  5'- cGCCGACCcguacGCGCUGAacaCCCCGAgcgguGUCGUc -3'
miRNA:   3'- cCGGUUGG-----CGCGGCU---GGGGCU-----UAGCA- -5'
12929 3' -59.1 NC_003387.1 + 42753 0.8 0.068397
Target:  5'- cGGaUCGGCUGCGCUGguGCCCCGAGUCGg -3'
miRNA:   3'- -CC-GGUUGGCGCGGC--UGGGGCUUAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.