miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12933 5' -62.8 NC_003387.1 + 26576 1.09 0.000166
Target:  5'- cGGGCGGUGCCGGGCAUGCUGGCUCGUg -3'
miRNA:   3'- -CCCGCCACGGCCCGUACGACCGAGCA- -5'
12933 5' -62.8 NC_003387.1 + 47030 0.73 0.09802
Target:  5'- uGGCGGcccgGCCGGGCAUGaggcgugGcGCUCGUu -3'
miRNA:   3'- cCCGCCa---CGGCCCGUACga-----C-CGAGCA- -5'
12933 5' -62.8 NC_003387.1 + 30720 0.72 0.125042
Target:  5'- gGGGCGcucaGCCGGGCAgGUgacccGGCUCGUc -3'
miRNA:   3'- -CCCGCca--CGGCCCGUaCGa----CCGAGCA- -5'
12933 5' -62.8 NC_003387.1 + 22685 0.72 0.125042
Target:  5'- uGGGCGGUGUCGacGGCGgcGCUGGCg--- -3'
miRNA:   3'- -CCCGCCACGGC--CCGUa-CGACCGagca -5'
12933 5' -62.8 NC_003387.1 + 30429 0.71 0.13915
Target:  5'- aGGCGGcuUGCCGGGUuUGUUGGCg--- -3'
miRNA:   3'- cCCGCC--ACGGCCCGuACGACCGagca -5'
12933 5' -62.8 NC_003387.1 + 24837 0.71 0.150674
Target:  5'- cGGGCGGcugGCCGGGCuc-CUG-CUCGa -3'
miRNA:   3'- -CCCGCCa--CGGCCCGuacGACcGAGCa -5'
12933 5' -62.8 NC_003387.1 + 75 0.71 0.154704
Target:  5'- cGGCGccG-CGGGCGuuUGCUGGCUCGa -3'
miRNA:   3'- cCCGCcaCgGCCCGU--ACGACCGAGCa -5'
12933 5' -62.8 NC_003387.1 + 9669 0.7 0.171817
Target:  5'- gGGGCGGUGCgGGGUcaGCUcGCcCGUc -3'
miRNA:   3'- -CCCGCCACGgCCCGuaCGAcCGaGCA- -5'
12933 5' -62.8 NC_003387.1 + 12440 0.7 0.180992
Target:  5'- aGGGCGcUGCCGaGGUucGCUGGCggCGg -3'
miRNA:   3'- -CCCGCcACGGC-CCGuaCGACCGa-GCa -5'
12933 5' -62.8 NC_003387.1 + 49591 0.7 0.180992
Target:  5'- cGGGCGGUgGCCuGGCAgugcugccGCUGGCggcccCGa -3'
miRNA:   3'- -CCCGCCA-CGGcCCGUa-------CGACCGa----GCa -5'
12933 5' -62.8 NC_003387.1 + 35673 0.69 0.205849
Target:  5'- cGGGCGGUGgcugagCGGGCAcgUGUgggGGC-CGUa -3'
miRNA:   3'- -CCCGCCACg-----GCCCGU--ACGa--CCGaGCA- -5'
12933 5' -62.8 NC_003387.1 + 10988 0.68 0.220466
Target:  5'- cGGCGGcGCCGcaaaggguaugggcGGCAguuucGUUGGCUCGa -3'
miRNA:   3'- cCCGCCaCGGC--------------CCGUa----CGACCGAGCa -5'
12933 5' -62.8 NC_003387.1 + 6934 0.68 0.222143
Target:  5'- gGGGCGGUuaucgggguGCgugaGGGCAcccUGCUGGCcgcccUCGUc -3'
miRNA:   3'- -CCCGCCA---------CGg---CCCGU---ACGACCG-----AGCA- -5'
12933 5' -62.8 NC_003387.1 + 34977 0.68 0.233606
Target:  5'- cGGGCcuGGUGCCcgucGGCAaGCcgGGUUCGUu -3'
miRNA:   3'- -CCCG--CCACGGc---CCGUaCGa-CCGAGCA- -5'
12933 5' -62.8 NC_003387.1 + 13331 0.68 0.233606
Target:  5'- uGGGCaagacguucGUGUCGGGCAUGCucgaaagcauUGGcCUCGa -3'
miRNA:   3'- -CCCGc--------CACGGCCCGUACG----------ACC-GAGCa -5'
12933 5' -62.8 NC_003387.1 + 20952 0.68 0.239522
Target:  5'- aGGGCGGgucauCCGGGCAgggGCgGGCa--- -3'
miRNA:   3'- -CCCGCCac---GGCCCGUa--CGaCCGagca -5'
12933 5' -62.8 NC_003387.1 + 21481 0.68 0.239522
Target:  5'- -cGCGccgGUCGGGCcggGCUGGUUCGUg -3'
miRNA:   3'- ccCGCca-CGGCCCGua-CGACCGAGCA- -5'
12933 5' -62.8 NC_003387.1 + 24097 0.68 0.245563
Target:  5'- -uGCGGUGUCGgcaucgccuGGCAUGCgGGCgUCGg -3'
miRNA:   3'- ccCGCCACGGC---------CCGUACGaCCG-AGCa -5'
12933 5' -62.8 NC_003387.1 + 17496 0.68 0.251729
Target:  5'- cGGGCGccgcggccguaGUGCuCGGccaGCAUGCgcagcGGCUCGg -3'
miRNA:   3'- -CCCGC-----------CACG-GCC---CGUACGa----CCGAGCa -5'
12933 5' -62.8 NC_003387.1 + 39419 0.67 0.264444
Target:  5'- uGGGUcgaGGUGaCCGGGCGccGCaaGCUCGg -3'
miRNA:   3'- -CCCG---CCAC-GGCCCGUa-CGacCGAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.