Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12933 | 5' | -62.8 | NC_003387.1 | + | 75 | 0.71 | 0.154704 |
Target: 5'- cGGCGccG-CGGGCGuuUGCUGGCUCGa -3' miRNA: 3'- cCCGCcaCgGCCCGU--ACGACCGAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 1615 | 0.67 | 0.270994 |
Target: 5'- uGGCGauuucgGUCGGcGCGUGCUGGCUg-- -3' miRNA: 3'- cCCGCca----CGGCC-CGUACGACCGAgca -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 3418 | 0.67 | 0.291428 |
Target: 5'- gGGGCcGUGCCcucGGCGUGCUcGGCgagCa- -3' miRNA: 3'- -CCCGcCACGGc--CCGUACGA-CCGa--Gca -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 6934 | 0.68 | 0.222143 |
Target: 5'- gGGGCGGUuaucgggguGCgugaGGGCAcccUGCUGGCcgcccUCGUc -3' miRNA: 3'- -CCCGCCA---------CGg---CCCGU---ACGACCG-----AGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 9669 | 0.7 | 0.171817 |
Target: 5'- gGGGCGGUGCgGGGUcaGCUcGCcCGUc -3' miRNA: 3'- -CCCGCCACGgCCCGuaCGAcCGaGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 10640 | 0.66 | 0.335861 |
Target: 5'- cGGCGGUGaaGGGUAcgGCguucGGcCUCGa -3' miRNA: 3'- cCCGCCACggCCCGUa-CGa---CC-GAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 10988 | 0.68 | 0.220466 |
Target: 5'- cGGCGGcGCCGcaaaggguaugggcGGCAguuucGUUGGCUCGa -3' miRNA: 3'- cCCGCCaCGGC--------------CCGUa----CGACCGAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 12440 | 0.7 | 0.180992 |
Target: 5'- aGGGCGcUGCCGaGGUucGCUGGCggCGg -3' miRNA: 3'- -CCCGCcACGGC-CCGuaCGACCGa-GCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 13331 | 0.68 | 0.233606 |
Target: 5'- uGGGCaagacguucGUGUCGGGCAUGCucgaaagcauUGGcCUCGa -3' miRNA: 3'- -CCCGc--------CACGGCCCGUACG----------ACC-GAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 14171 | 0.67 | 0.298502 |
Target: 5'- cGGGcCGG-GCCgcGGGCGUGagGGCgUCGUg -3' miRNA: 3'- -CCC-GCCaCGG--CCCGUACgaCCG-AGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 14805 | 0.67 | 0.298502 |
Target: 5'- cGGCGGUGCCgagccacgcGGGCA-GC-GGgUCGc -3' miRNA: 3'- cCCGCCACGG---------CCCGUaCGaCCgAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 17496 | 0.68 | 0.251729 |
Target: 5'- cGGGCGccgcggccguaGUGCuCGGccaGCAUGCgcagcGGCUCGg -3' miRNA: 3'- -CCCGC-----------CACG-GCC---CGUACGa----CCGAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 20952 | 0.68 | 0.239522 |
Target: 5'- aGGGCGGgucauCCGGGCAgggGCgGGCa--- -3' miRNA: 3'- -CCCGCCac---GGCCCGUa--CGaCCGagca -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 21481 | 0.68 | 0.239522 |
Target: 5'- -cGCGccgGUCGGGCcggGCUGGUUCGUg -3' miRNA: 3'- ccCGCca-CGGCCCGua-CGACCGAGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 22685 | 0.72 | 0.125042 |
Target: 5'- uGGGCGGUGUCGacGGCGgcGCUGGCg--- -3' miRNA: 3'- -CCCGCCACGGC--CCGUa-CGACCGagca -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 24097 | 0.68 | 0.245563 |
Target: 5'- -uGCGGUGUCGgcaucgccuGGCAUGCgGGCgUCGg -3' miRNA: 3'- ccCGCCACGGC---------CCGUACGaCCG-AGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 24837 | 0.71 | 0.150674 |
Target: 5'- cGGGCGGcugGCCGGGCuc-CUG-CUCGa -3' miRNA: 3'- -CCCGCCa--CGGCCCGuacGACcGAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 26576 | 1.09 | 0.000166 |
Target: 5'- cGGGCGGUGCCGGGCAUGCUGGCUCGUg -3' miRNA: 3'- -CCCGCCACGGCCCGUACGACCGAGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 27950 | 0.66 | 0.335861 |
Target: 5'- cGGuCGGggcGCUcGGCGUGCUcGGCUUGg -3' miRNA: 3'- cCC-GCCa--CGGcCCGUACGA-CCGAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 29317 | 0.66 | 0.320519 |
Target: 5'- aGGCGccgcgcuUGUCGGGCAUGUUcaGCUCGUc -3' miRNA: 3'- cCCGCc------ACGGCCCGUACGAc-CGAGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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