Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12933 | 5' | -62.8 | NC_003387.1 | + | 10988 | 0.68 | 0.220466 |
Target: 5'- cGGCGGcGCCGcaaaggguaugggcGGCAguuucGUUGGCUCGa -3' miRNA: 3'- cCCGCCaCGGC--------------CCGUa----CGACCGAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 48971 | 0.66 | 0.320519 |
Target: 5'- uGGCGaucGUGCacgCGGGCAUGC-GGC-CGUc -3' miRNA: 3'- cCCGC---CACG---GCCCGUACGaCCGaGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 39272 | 0.66 | 0.328124 |
Target: 5'- cGGCGa-GCUGGGCAaGCUG-CUCGa -3' miRNA: 3'- cCCGCcaCGGCCCGUaCGACcGAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 42078 | 0.66 | 0.335861 |
Target: 5'- uGGcGCGcGUGCUGcGgGUGCccGGCUCGUa -3' miRNA: 3'- -CC-CGC-CACGGCcCgUACGa-CCGAGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 26576 | 1.09 | 0.000166 |
Target: 5'- cGGGCGGUGCCGGGCAUGCUGGCUCGUg -3' miRNA: 3'- -CCCGCCACGGCCCGUACGACCGAGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 47030 | 0.73 | 0.09802 |
Target: 5'- uGGCGGcccgGCCGGGCAUGaggcgugGcGCUCGUu -3' miRNA: 3'- cCCGCCa---CGGCCCGUACga-----C-CGAGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 30720 | 0.72 | 0.125042 |
Target: 5'- gGGGCGcucaGCCGGGCAgGUgacccGGCUCGUc -3' miRNA: 3'- -CCCGCca--CGGCCCGUaCGa----CCGAGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 12440 | 0.7 | 0.180992 |
Target: 5'- aGGGCGcUGCCGaGGUucGCUGGCggCGg -3' miRNA: 3'- -CCCGCcACGGC-CCGuaCGACCGa-GCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 49591 | 0.7 | 0.180992 |
Target: 5'- cGGGCGGUgGCCuGGCAgugcugccGCUGGCggcccCGa -3' miRNA: 3'- -CCCGCCA-CGGcCCGUa-------CGACCGa----GCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 39419 | 0.67 | 0.264444 |
Target: 5'- uGGGUcgaGGUGaCCGGGCGccGCaaGCUCGg -3' miRNA: 3'- -CCCG---CCAC-GGCCCGUa-CGacCGAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 24097 | 0.68 | 0.245563 |
Target: 5'- -uGCGGUGUCGgcaucgccuGGCAUGCgGGCgUCGg -3' miRNA: 3'- ccCGCCACGGC---------CCGUACGaCCG-AGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 6934 | 0.68 | 0.222143 |
Target: 5'- gGGGCGGUuaucgggguGCgugaGGGCAcccUGCUGGCcgcccUCGUc -3' miRNA: 3'- -CCCGCCA---------CGg---CCCGU---ACGACCG-----AGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 1615 | 0.67 | 0.270994 |
Target: 5'- uGGCGauuucgGUCGGcGCGUGCUGGCUg-- -3' miRNA: 3'- cCCGCca----CGGCC-CGUACGACCGAgca -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 13331 | 0.68 | 0.233606 |
Target: 5'- uGGGCaagacguucGUGUCGGGCAUGCucgaaagcauUGGcCUCGa -3' miRNA: 3'- -CCCGc--------CACGGCCCGUACG----------ACC-GAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 21481 | 0.68 | 0.239522 |
Target: 5'- -cGCGccgGUCGGGCcggGCUGGUUCGUg -3' miRNA: 3'- ccCGCca-CGGCCCGua-CGACCGAGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 14171 | 0.67 | 0.298502 |
Target: 5'- cGGGcCGG-GCCgcGGGCGUGagGGCgUCGUg -3' miRNA: 3'- -CCC-GCCaCGG--CCCGUACgaCCG-AGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 10640 | 0.66 | 0.335861 |
Target: 5'- cGGCGGUGaaGGGUAcgGCguucGGcCUCGa -3' miRNA: 3'- cCCGCCACggCCCGUa-CGa---CC-GAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 34977 | 0.68 | 0.233606 |
Target: 5'- cGGGCcuGGUGCCcgucGGCAaGCcgGGUUCGUu -3' miRNA: 3'- -CCCG--CCACGGc---CCGUaCGa-CCGAGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 20952 | 0.68 | 0.239522 |
Target: 5'- aGGGCGGgucauCCGGGCAgggGCgGGCa--- -3' miRNA: 3'- -CCCGCCac---GGCCCGUa--CGaCCGagca -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 35673 | 0.69 | 0.205849 |
Target: 5'- cGGGCGGUGgcugagCGGGCAcgUGUgggGGC-CGUa -3' miRNA: 3'- -CCCGCCACg-----GCCCGU--ACGa--CCGaGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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