Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12942 | 5' | -56.3 | NC_003387.1 | + | 35713 | 0.66 | 0.658449 |
Target: 5'- cGCGGUuuGauuaGCGCCCGcUCGggGUCg -3' miRNA: 3'- -CGUUAcgCga--CGCGGGCaGGCuuCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 3254 | 0.66 | 0.647456 |
Target: 5'- aGCAAc-UGCUGCGCCUGgccgCCGAAa-- -3' miRNA: 3'- -CGUUacGCGACGCGGGCa---GGCUUcag -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 23301 | 0.66 | 0.647456 |
Target: 5'- cGCGGgccgcUGCGgcggccuccucCUGCGCCCGgcgggcgagaUCGAGGUCg -3' miRNA: 3'- -CGUU-----ACGC-----------GACGCGGGCa---------GGCUUCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 20516 | 0.66 | 0.646356 |
Target: 5'- aGCGcgGCGUcGCGCUCGUCggugaCGAcgcgcagcucggcGGUCa -3' miRNA: 3'- -CGUuaCGCGaCGCGGGCAG-----GCU-------------UCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 21706 | 0.66 | 0.625438 |
Target: 5'- gGCGA-GCGCg--GCCCGcgCCGAccuGGUCg -3' miRNA: 3'- -CGUUaCGCGacgCGGGCa-GGCU---UCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 23895 | 0.66 | 0.625438 |
Target: 5'- cCGAcGUGCUGCGCgCCGaggggCUGAAcGUCg -3' miRNA: 3'- cGUUaCGCGACGCG-GGCa----GGCUU-CAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 8944 | 0.66 | 0.625438 |
Target: 5'- cGCGAUGCaCgGCGCCCGcaUGAAGg- -3' miRNA: 3'- -CGUUACGcGaCGCGGGCagGCUUCag -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 1835 | 0.66 | 0.625438 |
Target: 5'- gGCGAaGgGCUGCgGCCUGUuuGAGaacggcGUCa -3' miRNA: 3'- -CGUUaCgCGACG-CGGGCAggCUU------CAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 31297 | 0.66 | 0.625438 |
Target: 5'- aGCcGUaGCuGCUGCGCCgGgccgCCGggGg- -3' miRNA: 3'- -CGuUA-CG-CGACGCGGgCa---GGCuuCag -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 4432 | 0.66 | 0.614433 |
Target: 5'- gGCAagGCGUUcGCcgaGCCCGcgCCGAAGg- -3' miRNA: 3'- -CGUuaCGCGA-CG---CGGGCa-GGCUUCag -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 22182 | 0.66 | 0.603444 |
Target: 5'- gGCGguccAUGuCGggGCGCCCGUugcacuugUCGggGUCg -3' miRNA: 3'- -CGU----UAC-GCgaCGCGGGCA--------GGCuuCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 46347 | 0.67 | 0.592479 |
Target: 5'- cGCAagGCGU--CGCCCGcggCCGAGGcCa -3' miRNA: 3'- -CGUuaCGCGacGCGGGCa--GGCUUCaG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 14936 | 0.67 | 0.582639 |
Target: 5'- cGCGG-GUGCUGCGCCCaGgcgcgcuugagcacgCCuuGAGGUCg -3' miRNA: 3'- -CGUUaCGCGACGCGGG-Ca--------------GG--CUUCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 27846 | 0.67 | 0.581548 |
Target: 5'- aCAggGCGCaGC-CaCCGcCCGAGGUCg -3' miRNA: 3'- cGUuaCGCGaCGcG-GGCaGGCUUCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 27199 | 0.67 | 0.570658 |
Target: 5'- cGCGA-GCGCaaccgGCGCaaGUCUGcGGUCg -3' miRNA: 3'- -CGUUaCGCGa----CGCGggCAGGCuUCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 51157 | 0.67 | 0.570658 |
Target: 5'- gGCGuuagGCGCUuCGCCguccuCGgggCCGAGGUCg -3' miRNA: 3'- -CGUua--CGCGAcGCGG-----GCa--GGCUUCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 18525 | 0.67 | 0.559819 |
Target: 5'- cGCGAcgugGCGCUGUgGCuuGUgCGcGAGUCg -3' miRNA: 3'- -CGUUa---CGCGACG-CGggCAgGC-UUCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 48096 | 0.67 | 0.549038 |
Target: 5'- gGCGcUGcCGCUGCGCCCGcgguggcucgCCGA--UCa -3' miRNA: 3'- -CGUuAC-GCGACGCGGGCa---------GGCUucAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 5138 | 0.67 | 0.549038 |
Target: 5'- cGCGAcgagggGCGCUcgGCGCCgGUCgGugcAGUCa -3' miRNA: 3'- -CGUUa-----CGCGA--CGCGGgCAGgCu--UCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 36086 | 0.68 | 0.535122 |
Target: 5'- uGCAuaAUGCGgUcaaucucgaacaggGCGCgCGUgCCGAGGUCg -3' miRNA: 3'- -CGU--UACGCgA--------------CGCGgGCA-GGCUUCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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