miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12945 3' -55.9 NC_003387.1 + 2092 0.72 0.358988
Target:  5'- gGGGGCCGugacuguuccuguugACGuGAucgccGACGCCCCagCGGCCg -3'
miRNA:   3'- -UCUCGGU---------------UGCuCU-----UUGCGGGG--GCUGG- -5'
12945 3' -55.9 NC_003387.1 + 43928 0.72 0.364093
Target:  5'- cGAGCUgAGCGGGAAucagguCGCCCgCCG-CCg -3'
miRNA:   3'- uCUCGG-UUGCUCUUu-----GCGGG-GGCuGG- -5'
12945 3' -55.9 NC_003387.1 + 31091 0.71 0.372713
Target:  5'- cGAGCUGACGcucGACGCCugCCCGAUCa -3'
miRNA:   3'- uCUCGGUUGCucuUUGCGG--GGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 24764 0.71 0.372713
Target:  5'- -cGGCCAAgcCGAGcacgccGAGCG-CCCCGACCg -3'
miRNA:   3'- ucUCGGUU--GCUC------UUUGCgGGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 47010 0.71 0.380588
Target:  5'- -cGGUCAGCGAcgacgcgGgcACGCCCuuGACCg -3'
miRNA:   3'- ucUCGGUUGCU-------CuuUGCGGGggCUGG- -5'
12945 3' -55.9 NC_003387.1 + 27871 0.71 0.38147
Target:  5'- cGAGCCAGCcacc-ACGCaCCCGGCCg -3'
miRNA:   3'- uCUCGGUUGcucuuUGCGgGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 4494 0.71 0.390363
Target:  5'- cGAGCCcGCG-GAGGCcCCgCUCGACCg -3'
miRNA:   3'- uCUCGGuUGCuCUUUGcGG-GGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 15915 0.71 0.398481
Target:  5'- cGAGCUGGCcgcgauuaucgguGAGAAG-GCCgCCCGGCCg -3'
miRNA:   3'- uCUCGGUUG-------------CUCUUUgCGG-GGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 49802 0.71 0.39939
Target:  5'- -cAGuUCGACGAGAGccuCGCCCgCGGCCu -3'
miRNA:   3'- ucUC-GGUUGCUCUUu--GCGGGgGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 7963 0.71 0.407628
Target:  5'- cGGGCCGcuucacggcggGCGGGugcuGCGCuucggcgCCCCGGCCg -3'
miRNA:   3'- uCUCGGU-----------UGCUCuu--UGCG-------GGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 50998 0.71 0.40855
Target:  5'- -cAGCac-CGGGAuGCGCCgCCCGGCCc -3'
miRNA:   3'- ucUCGguuGCUCUuUGCGG-GGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 582 0.71 0.40855
Target:  5'- gAGAuuGCCAACGAGAuugcggcgauuGACGCUCa-GGCCg -3'
miRNA:   3'- -UCU--CGGUUGCUCU-----------UUGCGGGggCUGG- -5'
12945 3' -55.9 NC_003387.1 + 27059 0.71 0.41784
Target:  5'- cGAGCCGACGGuGuaaauguCGCCCuuGGCg -3'
miRNA:   3'- uCUCGGUUGCU-Cuuu----GCGGGggCUGg -5'
12945 3' -55.9 NC_003387.1 + 38059 0.71 0.41784
Target:  5'- cGuGCCGcgguucgcgaucGCGAu-AACGCCCUCGGCCu -3'
miRNA:   3'- uCuCGGU------------UGCUcuUUGCGGGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 12346 0.7 0.427257
Target:  5'- --cGCCGACGucGAGGCccuuGgCCCCGGCCg -3'
miRNA:   3'- ucuCGGUUGCu-CUUUG----CgGGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 41099 0.7 0.427257
Target:  5'- uGAGCC-GCGAGcugcuGGCGCUgCaCGACCg -3'
miRNA:   3'- uCUCGGuUGCUCu----UUGCGGgG-GCUGG- -5'
12945 3' -55.9 NC_003387.1 + 26772 0.7 0.436799
Target:  5'- cGGGUUAGCGAGcAGCGCCagcaCCG-CCu -3'
miRNA:   3'- uCUCGGUUGCUCuUUGCGGg---GGCuGG- -5'
12945 3' -55.9 NC_003387.1 + 213 0.7 0.436799
Target:  5'- --uGCCGcguucguCGAGGGuugacaugcGCGCCCCCGACa -3'
miRNA:   3'- ucuCGGUu------GCUCUU---------UGCGGGGGCUGg -5'
12945 3' -55.9 NC_003387.1 + 14877 0.7 0.436799
Target:  5'- cGAGCCGcCGGGcgcAGGgGUgCCCGACCu -3'
miRNA:   3'- uCUCGGUuGCUC---UUUgCGgGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 35595 0.7 0.444521
Target:  5'- -cAGCCGGuCGAGGucgucgagcguCGCCCCCG-CCa -3'
miRNA:   3'- ucUCGGUU-GCUCUuu---------GCGGGGGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.