Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12946 | 5' | -59.9 | NC_003387.1 | + | 30858 | 1.09 | 0.000314 |
Target: 5'- aGCAGCUCGUGCGCGUCGGCACCUGGUg -3' miRNA: 3'- -CGUCGAGCACGCGCAGCCGUGGACCA- -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 8282 | 0.75 | 0.120545 |
Target: 5'- cGCAGCgccUCGUGCGCGUCGGCg---GGc -3' miRNA: 3'- -CGUCG---AGCACGCGCAGCCGuggaCCa -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 15934 | 0.74 | 0.138116 |
Target: 5'- cGCGGUggCGUGCGCGUCGGCcagcGCCg--- -3' miRNA: 3'- -CGUCGa-GCACGCGCAGCCG----UGGacca -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 21169 | 0.72 | 0.200408 |
Target: 5'- cGCAGCUCGUGuCGCGg-GGCugUcaUGGc -3' miRNA: 3'- -CGUCGAGCAC-GCGCagCCGugG--ACCa -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 22675 | 0.7 | 0.264661 |
Target: 5'- gGCGcGCUCGUGgGCGgugucgacggCGGCgcuggcgGCCUGGg -3' miRNA: 3'- -CGU-CGAGCACgCGCa---------GCCG-------UGGACCa -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 11761 | 0.7 | 0.265321 |
Target: 5'- uCAGCUCGgccucgauCGCGUCGcGCACCUuGGc -3' miRNA: 3'- cGUCGAGCac------GCGCAGC-CGUGGA-CCa -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 45243 | 0.7 | 0.271999 |
Target: 5'- gGguGCggGUGCGCGgcUCGGUgaucGCCUGGc -3' miRNA: 3'- -CguCGagCACGCGC--AGCCG----UGGACCa -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 32608 | 0.7 | 0.271999 |
Target: 5'- cGguGUUgGUGC-CGUCGGUguACCUGGc -3' miRNA: 3'- -CguCGAgCACGcGCAGCCG--UGGACCa -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 8843 | 0.7 | 0.271999 |
Target: 5'- aGCGGCUcacCGUGCGCGaUGGCccacgcgauauaGCaCUGGUg -3' miRNA: 3'- -CGUCGA---GCACGCGCaGCCG------------UG-GACCA- -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 12929 | 0.69 | 0.292128 |
Target: 5'- gGUGGCUCGUcgGCGCucggcagugccacGUCGGCGUCUGGc -3' miRNA: 3'- -CGUCGAGCA--CGCG-------------CAGCCGUGGACCa -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 31342 | 0.69 | 0.292843 |
Target: 5'- -aGGCUCuuggcgGUGuCGuCGUCuGGCACCUGGg -3' miRNA: 3'- cgUCGAG------CAC-GC-GCAG-CCGUGGACCa -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 45056 | 0.69 | 0.300063 |
Target: 5'- aGCAGgUCGccgaGCGCGUCgagGGCcguCCUGGg -3' miRNA: 3'- -CGUCgAGCa---CGCGCAG---CCGu--GGACCa -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 48834 | 0.69 | 0.306677 |
Target: 5'- uGCuGCUCG-GCGCGacgcaCGGCGugcacgcCCUGGUg -3' miRNA: 3'- -CGuCGAGCaCGCGCa----GCCGU-------GGACCA- -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 34722 | 0.69 | 0.314913 |
Target: 5'- gGguGCUUGUGCGCGaaacucgaCGGCACCc--- -3' miRNA: 3'- -CguCGAGCACGCGCa-------GCCGUGGacca -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 39393 | 0.68 | 0.330312 |
Target: 5'- aGguGCUCGUGCGCc-UGGCGCgCgagugGGUc -3' miRNA: 3'- -CguCGAGCACGCGcaGCCGUG-Ga----CCA- -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 8394 | 0.68 | 0.346259 |
Target: 5'- cCAGUUgCGUGCgGUGUCGGgGCCUcgccGGUg -3' miRNA: 3'- cGUCGA-GCACG-CGCAGCCgUGGA----CCA- -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 23960 | 0.68 | 0.346259 |
Target: 5'- uGCAGCaCGUGCGCagcgccgGGCGgCUGGUu -3' miRNA: 3'- -CGUCGaGCACGCGcag----CCGUgGACCA- -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 35804 | 0.67 | 0.366957 |
Target: 5'- aGCGGCgccccauguugUCGgccggguacugcaGCGCGUCGGCuaugucgugcaucGCCUGGg -3' miRNA: 3'- -CGUCG-----------AGCa------------CGCGCAGCCG-------------UGGACCa -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 30430 | 0.67 | 0.371198 |
Target: 5'- gGCGGCUUGccggGUuuGUUGGCGCCcUGGUc -3' miRNA: 3'- -CGUCGAGCa---CGcgCAGCCGUGG-ACCA- -5' |
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12946 | 5' | -59.9 | NC_003387.1 | + | 24821 | 0.67 | 0.371198 |
Target: 5'- aGCAGCUCG-GCGUacUCGGgCGgCUGGc -3' miRNA: 3'- -CGUCGAGCaCGCGc-AGCC-GUgGACCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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