miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12946 5' -59.9 NC_003387.1 + 1130 0.66 0.453001
Target:  5'- -gGGCgcacgGUGUGC-UCGGCGCCUGcGUg -3'
miRNA:   3'- cgUCGag---CACGCGcAGCCGUGGAC-CA- -5'
12946 5' -59.9 NC_003387.1 + 2175 0.67 0.397334
Target:  5'- aGCAGCUCG-GCGCcUUGGuCGCCgacaugUGGc -3'
miRNA:   3'- -CGUCGAGCaCGCGcAGCC-GUGG------ACCa -5'
12946 5' -59.9 NC_003387.1 + 5468 0.66 0.424623
Target:  5'- uCAGCUCGgGCagauCGUucaagucgccCGGCACCUGGc -3'
miRNA:   3'- cGUCGAGCaCGc---GCA----------GCCGUGGACCa -5'
12946 5' -59.9 NC_003387.1 + 8282 0.75 0.120545
Target:  5'- cGCAGCgccUCGUGCGCGUCGGCg---GGc -3'
miRNA:   3'- -CGUCG---AGCACGCGCAGCCGuggaCCa -5'
12946 5' -59.9 NC_003387.1 + 8394 0.68 0.346259
Target:  5'- cCAGUUgCGUGCgGUGUCGGgGCCUcgccGGUg -3'
miRNA:   3'- cGUCGA-GCACG-CGCAGCCgUGGA----CCA- -5'
12946 5' -59.9 NC_003387.1 + 8843 0.7 0.271999
Target:  5'- aGCGGCUcacCGUGCGCGaUGGCccacgcgauauaGCaCUGGUg -3'
miRNA:   3'- -CGUCGA---GCACGCGCaGCCG------------UG-GACCA- -5'
12946 5' -59.9 NC_003387.1 + 11308 0.66 0.476429
Target:  5'- gGUAGCUCGaacagcgacucgugcUGCGCcUCGGuCGCCcGGc -3'
miRNA:   3'- -CGUCGAGC---------------ACGCGcAGCC-GUGGaCCa -5'
12946 5' -59.9 NC_003387.1 + 11761 0.7 0.265321
Target:  5'- uCAGCUCGgccucgauCGCGUCGcGCACCUuGGc -3'
miRNA:   3'- cGUCGAGCac------GCGCAGC-CGUGGA-CCa -5'
12946 5' -59.9 NC_003387.1 + 12929 0.69 0.292128
Target:  5'- gGUGGCUCGUcgGCGCucggcagugccacGUCGGCGUCUGGc -3'
miRNA:   3'- -CGUCGAGCA--CGCG-------------CAGCCGUGGACCa -5'
12946 5' -59.9 NC_003387.1 + 15934 0.74 0.138116
Target:  5'- cGCGGUggCGUGCGCGUCGGCcagcGCCg--- -3'
miRNA:   3'- -CGUCGa-GCACGCGCAGCCG----UGGacca -5'
12946 5' -59.9 NC_003387.1 + 18538 0.66 0.424623
Target:  5'- uGUGGCUUGUGCGCGagucguUCGaGCGCaaGGc -3'
miRNA:   3'- -CGUCGAGCACGCGC------AGC-CGUGgaCCa -5'
12946 5' -59.9 NC_003387.1 + 19708 0.66 0.421844
Target:  5'- cGCAGCUCGUGaaCGUgccgaauaucccaaUGGUGCCgGGUa -3'
miRNA:   3'- -CGUCGAGCACgcGCA--------------GCCGUGGaCCA- -5'
12946 5' -59.9 NC_003387.1 + 21169 0.72 0.200408
Target:  5'- cGCAGCUCGUGuCGCGg-GGCugUcaUGGc -3'
miRNA:   3'- -CGUCGAGCAC-GCGCagCCGugG--ACCa -5'
12946 5' -59.9 NC_003387.1 + 22675 0.7 0.264661
Target:  5'- gGCGcGCUCGUGgGCGgugucgacggCGGCgcuggcgGCCUGGg -3'
miRNA:   3'- -CGU-CGAGCACgCGCa---------GCCG-------UGGACCa -5'
12946 5' -59.9 NC_003387.1 + 23960 0.68 0.346259
Target:  5'- uGCAGCaCGUGCGCagcgccgGGCGgCUGGUu -3'
miRNA:   3'- -CGUCGaGCACGCGcag----CCGUgGACCA- -5'
12946 5' -59.9 NC_003387.1 + 24092 0.67 0.415402
Target:  5'- --cGCU-GUGCgGUGUCGGCaucGCCUGGc -3'
miRNA:   3'- cguCGAgCACG-CGCAGCCG---UGGACCa -5'
12946 5' -59.9 NC_003387.1 + 24821 0.67 0.371198
Target:  5'- aGCAGCUCG-GCGUacUCGGgCGgCUGGc -3'
miRNA:   3'- -CGUCGAGCaCGCGc-AGCC-GUgGACCa -5'
12946 5' -59.9 NC_003387.1 + 25171 0.67 0.379778
Target:  5'- uCGGCUCG-GCGCGguggcccCGGCGCCg--- -3'
miRNA:   3'- cGUCGAGCaCGCGCa------GCCGUGGacca -5'
12946 5' -59.9 NC_003387.1 + 25805 0.66 0.443425
Target:  5'- gGCGGcCUCGgugGCGgccUGcUCGGCGgCCUGGg -3'
miRNA:   3'- -CGUC-GAGCa--CGC---GC-AGCCGU-GGACCa -5'
12946 5' -59.9 NC_003387.1 + 26699 0.66 0.453001
Target:  5'- cGCuGCUCGUcgacgccgucGUGCG-CGGCGCgagCUGGa -3'
miRNA:   3'- -CGuCGAGCA----------CGCGCaGCCGUG---GACCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.