miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12946 5' -59.9 NC_003387.1 + 30858 1.09 0.000314
Target:  5'- aGCAGCUCGUGCGCGUCGGCACCUGGUg -3'
miRNA:   3'- -CGUCGAGCACGCGCAGCCGUGGACCA- -5'
12946 5' -59.9 NC_003387.1 + 25805 0.66 0.443425
Target:  5'- gGCGGcCUCGgugGCGgccUGcUCGGCGgCCUGGg -3'
miRNA:   3'- -CGUC-GAGCa--CGC---GC-AGCCGU-GGACCa -5'
12946 5' -59.9 NC_003387.1 + 24092 0.67 0.415402
Target:  5'- --cGCU-GUGCgGUGUCGGCaucGCCUGGc -3'
miRNA:   3'- cguCGAgCACG-CGCAGCCG---UGGACCa -5'
12946 5' -59.9 NC_003387.1 + 2175 0.67 0.397334
Target:  5'- aGCAGCUCG-GCGCcUUGGuCGCCgacaugUGGc -3'
miRNA:   3'- -CGUCGAGCaCGCGcAGCC-GUGG------ACCa -5'
12946 5' -59.9 NC_003387.1 + 39393 0.68 0.330312
Target:  5'- aGguGCUCGUGCGCc-UGGCGCgCgagugGGUc -3'
miRNA:   3'- -CguCGAGCACGCGcaGCCGUG-Ga----CCA- -5'
12946 5' -59.9 NC_003387.1 + 48834 0.69 0.306677
Target:  5'- uGCuGCUCG-GCGCGacgcaCGGCGugcacgcCCUGGUg -3'
miRNA:   3'- -CGuCGAGCaCGCGCa----GCCGU-------GGACCA- -5'
12946 5' -59.9 NC_003387.1 + 37265 0.66 0.472482
Target:  5'- uCGGCccgCGUG-GCGgucaaGGCGCCUGGc -3'
miRNA:   3'- cGUCGa--GCACgCGCag---CCGUGGACCa -5'
12946 5' -59.9 NC_003387.1 + 18538 0.66 0.424623
Target:  5'- uGUGGCUUGUGCGCGagucguUCGaGCGCaaGGc -3'
miRNA:   3'- -CGUCGAGCACGCGC------AGC-CGUGgaCCa -5'
12946 5' -59.9 NC_003387.1 + 25171 0.67 0.379778
Target:  5'- uCGGCUCG-GCGCGguggcccCGGCGCCg--- -3'
miRNA:   3'- cGUCGAGCaCGCGCa------GCCGUGGacca -5'
12946 5' -59.9 NC_003387.1 + 45056 0.69 0.300063
Target:  5'- aGCAGgUCGccgaGCGCGUCgagGGCcguCCUGGg -3'
miRNA:   3'- -CGUCgAGCa---CGCGCAG---CCGu--GGACCa -5'
12946 5' -59.9 NC_003387.1 + 12929 0.69 0.292128
Target:  5'- gGUGGCUCGUcgGCGCucggcagugccacGUCGGCGUCUGGc -3'
miRNA:   3'- -CGUCGAGCA--CGCG-------------CAGCCGUGGACCa -5'
12946 5' -59.9 NC_003387.1 + 34975 0.66 0.472482
Target:  5'- cGCGGgcCUgGUGCcCGUCGGCaaGCCgGGUu -3'
miRNA:   3'- -CGUC--GAgCACGcGCAGCCG--UGGaCCA- -5'
12946 5' -59.9 NC_003387.1 + 31342 0.69 0.292843
Target:  5'- -aGGCUCuuggcgGUGuCGuCGUCuGGCACCUGGg -3'
miRNA:   3'- cgUCGAG------CAC-GC-GCAG-CCGUGGACCa -5'
12946 5' -59.9 NC_003387.1 + 19708 0.66 0.421844
Target:  5'- cGCAGCUCGUGaaCGUgccgaauaucccaaUGGUGCCgGGUa -3'
miRNA:   3'- -CGUCGAGCACgcGCA--------------GCCGUGGaCCA- -5'
12946 5' -59.9 NC_003387.1 + 51303 0.66 0.472482
Target:  5'- cCAGCUCGUcgGCGgCGGCGCCUc-- -3'
miRNA:   3'- cGUCGAGCAcgCGCaGCCGUGGAcca -5'
12946 5' -59.9 NC_003387.1 + 26699 0.66 0.453001
Target:  5'- cGCuGCUCGUcgacgccgucGUGCG-CGGCGCgagCUGGa -3'
miRNA:   3'- -CGuCGAGCA----------CGCGCaGCCGUG---GACCa -5'
12946 5' -59.9 NC_003387.1 + 34722 0.69 0.314913
Target:  5'- gGguGCUUGUGCGCGaaacucgaCGGCACCc--- -3'
miRNA:   3'- -CguCGAGCACGCGCa-------GCCGUGGacca -5'
12946 5' -59.9 NC_003387.1 + 8394 0.68 0.346259
Target:  5'- cCAGUUgCGUGCgGUGUCGGgGCCUcgccGGUg -3'
miRNA:   3'- cGUCGA-GCACG-CGCAGCCgUGGA----CCA- -5'
12946 5' -59.9 NC_003387.1 + 23960 0.68 0.346259
Target:  5'- uGCAGCaCGUGCGCagcgccgGGCGgCUGGUu -3'
miRNA:   3'- -CGUCGaGCACGCGcag----CCGUgGACCA- -5'
12946 5' -59.9 NC_003387.1 + 35804 0.67 0.366957
Target:  5'- aGCGGCgccccauguugUCGgccggguacugcaGCGCGUCGGCuaugucgugcaucGCCUGGg -3'
miRNA:   3'- -CGUCG-----------AGCa------------CGCGCAGCCG-------------UGGACCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.