miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12956 3' -57.7 NC_003387.1 + 12303 0.66 0.586879
Target:  5'- cGGGCcGGUUCGCCGuCGCC-GA-CGUa -3'
miRNA:   3'- cUCUGuCCGAGCGGC-GUGGaCUaGCG- -5'
12956 3' -57.7 NC_003387.1 + 48781 0.66 0.586879
Target:  5'- --cGCAGccaGCUCGCCGC---UGAUCGCc -3'
miRNA:   3'- cucUGUC---CGAGCGGCGuggACUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 33048 0.66 0.586879
Target:  5'- ----aGGGCaccgUGCCGCACCgGGUgCGCg -3'
miRNA:   3'- cucugUCCGa---GCGGCGUGGaCUA-GCG- -5'
12956 3' -57.7 NC_003387.1 + 21602 0.66 0.586879
Target:  5'- ---uCGGGCggCGCC-CACCUGG-CGCu -3'
miRNA:   3'- cucuGUCCGa-GCGGcGUGGACUaGCG- -5'
12956 3' -57.7 NC_003387.1 + 206 0.66 0.586879
Target:  5'- -cGGC-GGCUUGUCGCuCUUG-UCGCg -3'
miRNA:   3'- cuCUGuCCGAGCGGCGuGGACuAGCG- -5'
12956 3' -57.7 NC_003387.1 + 38636 0.66 0.576075
Target:  5'- --cGCAGGUacUCGCCGUucuuACCgaGGUCGUg -3'
miRNA:   3'- cucUGUCCG--AGCGGCG----UGGa-CUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 33965 0.66 0.576075
Target:  5'- cGGGGuCGGGUaugagcUGCCGCAgCgGGUCGCg -3'
miRNA:   3'- -CUCU-GUCCGa-----GCGGCGUgGaCUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 24528 0.66 0.576075
Target:  5'- cGAGcuGCAGG-UCGCCGC-CCUGAa--- -3'
miRNA:   3'- -CUC--UGUCCgAGCGGCGuGGACUagcg -5'
12956 3' -57.7 NC_003387.1 + 266 0.66 0.565317
Target:  5'- --uGCccuGGCUgCGCCGCGCC-GGUCGa -3'
miRNA:   3'- cucUGu--CCGA-GCGGCGUGGaCUAGCg -5'
12956 3' -57.7 NC_003387.1 + 7975 0.66 0.565317
Target:  5'- -cGGCGGGCgggUGCUGCGCUUcGG-CGCc -3'
miRNA:   3'- cuCUGUCCGa--GCGGCGUGGA-CUaGCG- -5'
12956 3' -57.7 NC_003387.1 + 24165 0.66 0.565317
Target:  5'- -cGAC-GGCgaUCGCCGC-CUcGGUCGCc -3'
miRNA:   3'- cuCUGuCCG--AGCGGCGuGGaCUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 13575 0.66 0.562099
Target:  5'- -cGACGGGCaggacgucggcuggUCGCCGCAgUCUGGcagcccCGCg -3'
miRNA:   3'- cuCUGUCCG--------------AGCGGCGU-GGACUa-----GCG- -5'
12956 3' -57.7 NC_003387.1 + 32614 0.66 0.554611
Target:  5'- ---uCGGGCUCGCCGCGg--GggCGCu -3'
miRNA:   3'- cucuGUCCGAGCGGCGUggaCuaGCG- -5'
12956 3' -57.7 NC_003387.1 + 41408 0.66 0.554611
Target:  5'- uGGACAaucucgccGaGCUUGCCGCugucGCCgccGGUCGCa -3'
miRNA:   3'- cUCUGU--------C-CGAGCGGCG----UGGa--CUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 13896 0.66 0.554611
Target:  5'- cGGGCAGGUUCgacgucggGUgGCGCCcGAUCGg -3'
miRNA:   3'- cUCUGUCCGAG--------CGgCGUGGaCUAGCg -5'
12956 3' -57.7 NC_003387.1 + 8769 0.66 0.553544
Target:  5'- --uGCGGGCcuUCGCCGUgcggcggcgggcgACCUGAUuccCGCu -3'
miRNA:   3'- cucUGUCCG--AGCGGCG-------------UGGACUA---GCG- -5'
12956 3' -57.7 NC_003387.1 + 20970 0.66 0.543966
Target:  5'- aGGGGCGGGCaaCGCCGCGaaUGc-CGCg -3'
miRNA:   3'- -CUCUGUCCGa-GCGGCGUggACuaGCG- -5'
12956 3' -57.7 NC_003387.1 + 30107 0.66 0.543966
Target:  5'- -cGGCGGGUacCGCCGCaaggGCCUGAgcuUCGa -3'
miRNA:   3'- cuCUGUCCGa-GCGGCG----UGGACU---AGCg -5'
12956 3' -57.7 NC_003387.1 + 12199 0.66 0.542905
Target:  5'- cGGGCAGG-UCGCUGCucggugccgggccACCggcGGUCGCc -3'
miRNA:   3'- cUCUGUCCgAGCGGCG-------------UGGa--CUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 51848 0.66 0.542905
Target:  5'- -uGACcGGCgUCGCUGCcgcggugGCCccggUGAUCGCg -3'
miRNA:   3'- cuCUGuCCG-AGCGGCG-------UGG----ACUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.