Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12956 | 3' | -57.7 | NC_003387.1 | + | 10253 | 0.68 | 0.442222 |
Target: 5'- -cGGCGGGaUCGCC-CGgUUGGUCGCg -3' miRNA: 3'- cuCUGUCCgAGCGGcGUgGACUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 36056 | 0.66 | 0.533389 |
Target: 5'- --uGCAGcuugaUCGCCGaCACCUGGUCGa -3' miRNA: 3'- cucUGUCcg---AGCGGC-GUGGACUAGCg -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 17108 | 0.66 | 0.533389 |
Target: 5'- -cGGCGGGCUCcucgggGCCGUAggcGAUCGCu -3' miRNA: 3'- cuCUGUCCGAG------CGGCGUggaCUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 6100 | 0.67 | 0.512463 |
Target: 5'- -cGGCAGGCUCGaa-CACCUGcgacaugCGCg -3' miRNA: 3'- cuCUGUCCGAGCggcGUGGACua-----GCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 4154 | 0.67 | 0.502127 |
Target: 5'- cGAGGCGGGCgucgaugcaCGCCugGCACgUGAccucggCGCg -3' miRNA: 3'- -CUCUGUCCGa--------GCGG--CGUGgACUa-----GCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 22944 | 0.67 | 0.502127 |
Target: 5'- -cGGCAuGCggucaCGCCGUAgCUGAUCGUc -3' miRNA: 3'- cuCUGUcCGa----GCGGCGUgGACUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 14641 | 0.67 | 0.481737 |
Target: 5'- -cGuCAGGC-CGCCGCGCacagUGA-CGCg -3' miRNA: 3'- cuCuGUCCGaGCGGCGUGg---ACUaGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 24704 | 0.67 | 0.471694 |
Target: 5'- aGGAUcGGCUUGCCGCGCUc-GUCGg -3' miRNA: 3'- cUCUGuCCGAGCGGCGUGGacUAGCg -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 9395 | 0.68 | 0.451932 |
Target: 5'- cGAG-CAGGaaaUUGCCcgGCGCUgUGAUCGCg -3' miRNA: 3'- -CUCuGUCCg--AGCGG--CGUGG-ACUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 12199 | 0.66 | 0.542905 |
Target: 5'- cGGGCAGG-UCGCUGCucggugccgggccACCggcGGUCGCc -3' miRNA: 3'- cUCUGUCCgAGCGGCG-------------UGGa--CUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 8769 | 0.66 | 0.553544 |
Target: 5'- --uGCGGGCcuUCGCCGUgcggcggcgggcgACCUGAUuccCGCu -3' miRNA: 3'- cucUGUCCG--AGCGGCG-------------UGGACUA---GCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 13896 | 0.66 | 0.554611 |
Target: 5'- cGGGCAGGUUCgacgucggGUgGCGCCcGAUCGg -3' miRNA: 3'- cUCUGUCCGAG--------CGgCGUGGaCUAGCg -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 206 | 0.66 | 0.586879 |
Target: 5'- -cGGC-GGCUUGUCGCuCUUG-UCGCg -3' miRNA: 3'- cuCUGuCCGAGCGGCGuGGACuAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 21602 | 0.66 | 0.586879 |
Target: 5'- ---uCGGGCggCGCC-CACCUGG-CGCu -3' miRNA: 3'- cucuGUCCGa-GCGGcGUGGACUaGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 38636 | 0.66 | 0.576075 |
Target: 5'- --cGCAGGUacUCGCCGUucuuACCgaGGUCGUg -3' miRNA: 3'- cucUGUCCG--AGCGGCG----UGGa-CUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 33965 | 0.66 | 0.576075 |
Target: 5'- cGGGGuCGGGUaugagcUGCCGCAgCgGGUCGCg -3' miRNA: 3'- -CUCU-GUCCGa-----GCGGCGUgGaCUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 24528 | 0.66 | 0.576075 |
Target: 5'- cGAGcuGCAGG-UCGCCGC-CCUGAa--- -3' miRNA: 3'- -CUC--UGUCCgAGCGGCGuGGACUagcg -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 24165 | 0.66 | 0.565317 |
Target: 5'- -cGAC-GGCgaUCGCCGC-CUcGGUCGCc -3' miRNA: 3'- cuCUGuCCG--AGCGGCGuGGaCUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 7975 | 0.66 | 0.565317 |
Target: 5'- -cGGCGGGCgggUGCUGCGCUUcGG-CGCc -3' miRNA: 3'- cuCUGUCCGa--GCGGCGUGGA-CUaGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 41408 | 0.66 | 0.554611 |
Target: 5'- uGGACAaucucgccGaGCUUGCCGCugucGCCgccGGUCGCa -3' miRNA: 3'- cUCUGU--------C-CGAGCGGCG----UGGa--CUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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