miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12957 5' -57.4 NC_003387.1 + 48282 0.7 0.369556
Target:  5'- gGCCuUCGGCGCGG-GCUCggCGaacGCCu -3'
miRNA:   3'- gCGGcAGCCGCGCUaCGAGa-GCa--UGG- -5'
12957 5' -57.4 NC_003387.1 + 4172 0.7 0.369556
Target:  5'- aCGCCuGgcacgugaccUCGGCGCGGUGCU-UCGgccACCg -3'
miRNA:   3'- -GCGG-C----------AGCCGCGCUACGAgAGCa--UGG- -5'
12957 5' -57.4 NC_003387.1 + 18482 0.7 0.375534
Target:  5'- aGCCgGUCGaGCGCcccgagggccugcaGcAUGCUCUCGgGCCg -3'
miRNA:   3'- gCGG-CAGC-CGCG--------------C-UACGAGAGCaUGG- -5'
12957 5' -57.4 NC_003387.1 + 48945 0.7 0.378117
Target:  5'- uGCUGgCGG-GCGGgcUGCUCggCGUACCa -3'
miRNA:   3'- gCGGCaGCCgCGCU--ACGAGa-GCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 18908 0.7 0.378117
Target:  5'- aCGCCGUCGGCGgCGc-GCUCg---ACCc -3'
miRNA:   3'- -GCGGCAGCCGC-GCuaCGAGagcaUGG- -5'
12957 5' -57.4 NC_003387.1 + 20981 0.7 0.395634
Target:  5'- aCGCCG-CGaaugcCGCGAUaGCUCUCGUcggcgacagcGCCg -3'
miRNA:   3'- -GCGGCaGCc----GCGCUA-CGAGAGCA----------UGG- -5'
12957 5' -57.4 NC_003387.1 + 14467 0.7 0.413667
Target:  5'- -uCCGUUGGCuGCGuGUGCUgCUCGgcgagGCCa -3'
miRNA:   3'- gcGGCAGCCG-CGC-UACGA-GAGCa----UGG- -5'
12957 5' -57.4 NC_003387.1 + 10045 0.7 0.413667
Target:  5'- gCGCCGagGGCGCGGUGUcggccgguaUCacggCGgcgACCa -3'
miRNA:   3'- -GCGGCagCCGCGCUACG---------AGa---GCa--UGG- -5'
12957 5' -57.4 NC_003387.1 + 1375 0.69 0.422871
Target:  5'- uCGCCGUCGGCGCucagcgggucggGGUcgcGCUCgaagUUGUGCg -3'
miRNA:   3'- -GCGGCAGCCGCG------------CUA---CGAG----AGCAUGg -5'
12957 5' -57.4 NC_003387.1 + 47285 0.69 0.422871
Target:  5'- cCGCCGUCGGCGCccucggucGAguUGUcCUCGgcggGCUu -3'
miRNA:   3'- -GCGGCAGCCGCG--------CU--ACGaGAGCa---UGG- -5'
12957 5' -57.4 NC_003387.1 + 23483 0.69 0.422871
Target:  5'- cCGCCGuUCGaGCG-GcgGUUCUgGUGCCc -3'
miRNA:   3'- -GCGGC-AGC-CGCgCuaCGAGAgCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 26121 0.69 0.432197
Target:  5'- gCGCCagGUCGGCGCGuccgucGCcgCUCGcgcgGCCu -3'
miRNA:   3'- -GCGG--CAGCCGCGCua----CGa-GAGCa---UGG- -5'
12957 5' -57.4 NC_003387.1 + 29639 0.69 0.441642
Target:  5'- aCGCgCGaCGGCGCGAguaaccgGCUgCUCGaacGCCu -3'
miRNA:   3'- -GCG-GCaGCCGCGCUa------CGA-GAGCa--UGG- -5'
12957 5' -57.4 NC_003387.1 + 48834 0.69 0.451203
Target:  5'- uGCUGcUCGGCGCGAcGCacggCGUGCa -3'
miRNA:   3'- gCGGC-AGCCGCGCUaCGaga-GCAUGg -5'
12957 5' -57.4 NC_003387.1 + 29077 0.69 0.459903
Target:  5'- gCGUCG-CGGCGCuGUGCagguucaUCUCGgaUGCCg -3'
miRNA:   3'- -GCGGCaGCCGCGcUACG-------AGAGC--AUGG- -5'
12957 5' -57.4 NC_003387.1 + 19678 0.69 0.460875
Target:  5'- -cCCGgugCGGCaCGGUGCcCUCGUACa -3'
miRNA:   3'- gcGGCa--GCCGcGCUACGaGAGCAUGg -5'
12957 5' -57.4 NC_003387.1 + 12757 0.68 0.470657
Target:  5'- -aUCGUCGuGCGCGAccucGCgCUCGUACUc -3'
miRNA:   3'- gcGGCAGC-CGCGCUa---CGaGAGCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 11268 0.68 0.480543
Target:  5'- gGCCGcgUCGGCGacuCGAUcaagGCUCUUGcgACCg -3'
miRNA:   3'- gCGGC--AGCCGC---GCUA----CGAGAGCa-UGG- -5'
12957 5' -57.4 NC_003387.1 + 15174 0.68 0.490529
Target:  5'- aGcCCGUCGGCGaCGAUcGCggCUUGaacGCCg -3'
miRNA:   3'- gC-GGCAGCCGC-GCUA-CGa-GAGCa--UGG- -5'
12957 5' -57.4 NC_003387.1 + 11408 0.68 0.490529
Target:  5'- gGCCGcgaUCGGCcccgaGGUGCUgucgucggugCUCGUGCCc -3'
miRNA:   3'- gCGGC---AGCCGcg---CUACGA----------GAGCAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.