miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12957 5' -57.4 NC_003387.1 + 35813 1.11 0.000542
Target:  5'- gCGCCGUCGGCGCGAUGCUCUCGUACCc -3'
miRNA:   3'- -GCGGCAGCCGCGCUACGAGAGCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 6786 0.77 0.15294
Target:  5'- gGCCGUCGGCGaacacGCUCgggcaCGUGCCg -3'
miRNA:   3'- gCGGCAGCCGCgcua-CGAGa----GCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 11591 0.76 0.165277
Target:  5'- gGCCGUCGGCGCGcUGCcacuugaUCcggUCGUGCa -3'
miRNA:   3'- gCGGCAGCCGCGCuACG-------AG---AGCAUGg -5'
12957 5' -57.4 NC_003387.1 + 13577 0.75 0.194172
Target:  5'- aCGCCcUCGGCGCGGaaccugUGCUUUUG-ACCg -3'
miRNA:   3'- -GCGGcAGCCGCGCU------ACGAGAGCaUGG- -5'
12957 5' -57.4 NC_003387.1 + 23840 0.74 0.221067
Target:  5'- gCGCCGggacUCGGCGCcGUGCcgCUCGcggUACCa -3'
miRNA:   3'- -GCGGC----AGCCGCGcUACGa-GAGC---AUGG- -5'
12957 5' -57.4 NC_003387.1 + 37295 0.74 0.226813
Target:  5'- gCGCuCGUCGGCGCGGUcgucgaccGCgccgaCGUGCCg -3'
miRNA:   3'- -GCG-GCAGCCGCGCUA--------CGaga--GCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 25106 0.74 0.226813
Target:  5'- aGCCgGUCGGUGuCGucgagGCcCUCGUACCa -3'
miRNA:   3'- gCGG-CAGCCGC-GCua---CGaGAGCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 10879 0.74 0.238684
Target:  5'- cCGCCGUCGGcCGCuggccgaccagGAUGCUCagcUCGUcgaugaucuGCCa -3'
miRNA:   3'- -GCGGCAGCC-GCG-----------CUACGAG---AGCA---------UGG- -5'
12957 5' -57.4 NC_003387.1 + 2918 0.74 0.238684
Target:  5'- gGCCG-CGG-GCGAgGCUCUCGUcgaacugcGCCa -3'
miRNA:   3'- gCGGCaGCCgCGCUaCGAGAGCA--------UGG- -5'
12957 5' -57.4 NC_003387.1 + 2353 0.73 0.244813
Target:  5'- cCGCCGUCGGCGuCGA-GCgccaCGUACg -3'
miRNA:   3'- -GCGGCAGCCGC-GCUaCGaga-GCAUGg -5'
12957 5' -57.4 NC_003387.1 + 40392 0.73 0.251071
Target:  5'- uCGCCGUUagcgauacGCGCGAggaUGCUgucgCUCGUGCCg -3'
miRNA:   3'- -GCGGCAGc-------CGCGCU---ACGA----GAGCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 22975 0.73 0.263983
Target:  5'- uGCCGUCGGCGUccaGCUCgcccgCGUagcuGCCg -3'
miRNA:   3'- gCGGCAGCCGCGcuaCGAGa----GCA----UGG- -5'
12957 5' -57.4 NC_003387.1 + 14202 0.72 0.291415
Target:  5'- aCGCCGUCGGCGCucacuUGCcgccCUCGcacGCCc -3'
miRNA:   3'- -GCGGCAGCCGCGcu---ACGa---GAGCa--UGG- -5'
12957 5' -57.4 NC_003387.1 + 42689 0.72 0.305947
Target:  5'- gCGCCcUCGGCGCGcuucgGCUCgUCGUcgucgucgcccgGCCg -3'
miRNA:   3'- -GCGGcAGCCGCGCua---CGAG-AGCA------------UGG- -5'
12957 5' -57.4 NC_003387.1 + 9913 0.71 0.321028
Target:  5'- cCGCCGUCGGgGCucgGCUgccaccgCGUGCCu -3'
miRNA:   3'- -GCGGCAGCCgCGcuaCGAga-----GCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 26711 0.71 0.328774
Target:  5'- aCGCCGUCGuGCGCGgcGCgagcuggaUCGcgACCc -3'
miRNA:   3'- -GCGGCAGC-CGCGCuaCGag------AGCa-UGG- -5'
12957 5' -57.4 NC_003387.1 + 15291 0.71 0.336658
Target:  5'- -aCCGUCGGCGgcuUGggGCUCUUGgucGCCa -3'
miRNA:   3'- gcGGCAGCCGC---GCuaCGAGAGCa--UGG- -5'
12957 5' -57.4 NC_003387.1 + 27797 0.71 0.347925
Target:  5'- cCGCCGUCGGuCGCGGcggucacaacgcacuUGC-Cg-GUGCCg -3'
miRNA:   3'- -GCGGCAGCC-GCGCU---------------ACGaGagCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 48424 0.71 0.352836
Target:  5'- uGCCGggucgCGGUGCGcUGCUCgccCGcgGCCu -3'
miRNA:   3'- gCGGCa----GCCGCGCuACGAGa--GCa-UGG- -5'
12957 5' -57.4 NC_003387.1 + 48282 0.7 0.369556
Target:  5'- gGCCuUCGGCGCGG-GCUCggCGaacGCCu -3'
miRNA:   3'- gCGGcAGCCGCGCUaCGAGa-GCa--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.