miRNA display CGI


Results 1 - 20 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12957 5' -57.4 NC_003387.1 + 174 0.68 0.500611
Target:  5'- gGCCGaCGGCaagaCGGUGCUCgacUCGgcCCg -3'
miRNA:   3'- gCGGCaGCCGc---GCUACGAG---AGCauGG- -5'
12957 5' -57.4 NC_003387.1 + 467 0.68 0.510783
Target:  5'- gGCCGacggcgacCGGCGCGA-GCUgCUCGUcgcgaugcgcGCCc -3'
miRNA:   3'- gCGGCa-------GCCGCGCUaCGA-GAGCA----------UGG- -5'
12957 5' -57.4 NC_003387.1 + 740 0.67 0.584025
Target:  5'- gGCCGUCGGUGCGcgcgacGUGUggcgCGauggGCCu -3'
miRNA:   3'- gCGGCAGCCGCGC------UACGaga-GCa---UGG- -5'
12957 5' -57.4 NC_003387.1 + 1375 0.69 0.422871
Target:  5'- uCGCCGUCGGCGCucagcgggucggGGUcgcGCUCgaagUUGUGCg -3'
miRNA:   3'- -GCGGCAGCCGCG------------CUA---CGAG----AGCAUGg -5'
12957 5' -57.4 NC_003387.1 + 2353 0.73 0.244813
Target:  5'- cCGCCGUCGGCGuCGA-GCgccaCGUACg -3'
miRNA:   3'- -GCGGCAGCCGC-GCUaCGaga-GCAUGg -5'
12957 5' -57.4 NC_003387.1 + 2918 0.74 0.238684
Target:  5'- gGCCG-CGG-GCGAgGCUCUCGUcgaacugcGCCa -3'
miRNA:   3'- gCGGCaGCCgCGCUaCGAGAGCA--------UGG- -5'
12957 5' -57.4 NC_003387.1 + 3691 0.66 0.594699
Target:  5'- -aCCGUCGaGCcgGUGAUGCUCaggUCGauUGCCa -3'
miRNA:   3'- gcGGCAGC-CG--CGCUACGAG---AGC--AUGG- -5'
12957 5' -57.4 NC_003387.1 + 4003 0.66 0.605404
Target:  5'- uCGUCG-CGGCGCacGGUGCUCgacaacGCCa -3'
miRNA:   3'- -GCGGCaGCCGCG--CUACGAGagca--UGG- -5'
12957 5' -57.4 NC_003387.1 + 4172 0.7 0.369556
Target:  5'- aCGCCuGgcacgugaccUCGGCGCGGUGCU-UCGgccACCg -3'
miRNA:   3'- -GCGG-C----------AGCCGCGCUACGAgAGCa--UGG- -5'
12957 5' -57.4 NC_003387.1 + 4531 0.67 0.573389
Target:  5'- cCGCCGcCGGUGCGG-GCacCUUGcggGCCu -3'
miRNA:   3'- -GCGGCaGCCGCGCUaCGa-GAGCa--UGG- -5'
12957 5' -57.4 NC_003387.1 + 4812 0.67 0.541786
Target:  5'- cCGCCGacCaGCGCG-UGCgcaagCUCGUGCg -3'
miRNA:   3'- -GCGGCa-GcCGCGCuACGa----GAGCAUGg -5'
12957 5' -57.4 NC_003387.1 + 6786 0.77 0.15294
Target:  5'- gGCCGUCGGCGaacacGCUCgggcaCGUGCCg -3'
miRNA:   3'- gCGGCAGCCGCgcua-CGAGa----GCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 8088 0.66 0.61613
Target:  5'- uGCCgGUCGGCGCcaacccgcccGAggGCgagcccagCUCGUACg -3'
miRNA:   3'- gCGG-CAGCCGCG----------CUa-CGa-------GAGCAUGg -5'
12957 5' -57.4 NC_003387.1 + 9662 0.68 0.500611
Target:  5'- aGCCcUCGGgGCGGUGCggggucagCUCGc-CCg -3'
miRNA:   3'- gCGGcAGCCgCGCUACGa-------GAGCauGG- -5'
12957 5' -57.4 NC_003387.1 + 9913 0.71 0.321028
Target:  5'- cCGCCGUCGGgGCucgGCUgccaccgCGUGCCu -3'
miRNA:   3'- -GCGGCAGCCgCGcuaCGAga-----GCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 10045 0.7 0.413667
Target:  5'- gCGCCGagGGCGCGGUGUcggccgguaUCacggCGgcgACCa -3'
miRNA:   3'- -GCGGCagCCGCGCUACG---------AGa---GCa--UGG- -5'
12957 5' -57.4 NC_003387.1 + 10398 0.68 0.52104
Target:  5'- uGCCGcUCGGUGaucUGCUCgUCGcGCCa -3'
miRNA:   3'- gCGGC-AGCCGCgcuACGAG-AGCaUGG- -5'
12957 5' -57.4 NC_003387.1 + 10436 0.66 0.637614
Target:  5'- gGCUGUCGGCGgGcAUcgacagcgcGCUgUCGgucGCCg -3'
miRNA:   3'- gCGGCAGCCGCgC-UA---------CGAgAGCa--UGG- -5'
12957 5' -57.4 NC_003387.1 + 10879 0.74 0.238684
Target:  5'- cCGCCGUCGGcCGCuggccgaccagGAUGCUCagcUCGUcgaugaucuGCCa -3'
miRNA:   3'- -GCGGCAGCC-GCG-----------CUACGAG---AGCA---------UGG- -5'
12957 5' -57.4 NC_003387.1 + 11268 0.68 0.480543
Target:  5'- gGCCGcgUCGGCGacuCGAUcaagGCUCUUGcgACCg -3'
miRNA:   3'- gCGGC--AGCCGC---GCUA----CGAGAGCa-UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.