miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12957 5' -57.4 NC_003387.1 + 35813 1.11 0.000542
Target:  5'- gCGCCGUCGGCGCGAUGCUCUCGUACCc -3'
miRNA:   3'- -GCGGCAGCCGCGCUACGAGAGCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 467 0.68 0.510783
Target:  5'- gGCCGacggcgacCGGCGCGA-GCUgCUCGUcgcgaugcgcGCCc -3'
miRNA:   3'- gCGGCa-------GCCGCGCUaCGA-GAGCA----------UGG- -5'
12957 5' -57.4 NC_003387.1 + 40840 0.68 0.510783
Target:  5'- gCGCCGaUCGuGCGCGAcGCgCUC--ACCg -3'
miRNA:   3'- -GCGGC-AGC-CGCGCUaCGaGAGcaUGG- -5'
12957 5' -57.4 NC_003387.1 + 39157 0.66 0.645132
Target:  5'- gCGCCGagggcguguacuggUCGGUGCGcgacauucgcGUGCagCUCG-ACCa -3'
miRNA:   3'- -GCGGC--------------AGCCGCGC----------UACGa-GAGCaUGG- -5'
12957 5' -57.4 NC_003387.1 + 18908 0.7 0.378117
Target:  5'- aCGCCGUCGGCGgCGc-GCUCg---ACCc -3'
miRNA:   3'- -GCGGCAGCCGC-GCuaCGAGagcaUGG- -5'
12957 5' -57.4 NC_003387.1 + 20981 0.7 0.395634
Target:  5'- aCGCCG-CGaaugcCGCGAUaGCUCUCGUcggcgacagcGCCg -3'
miRNA:   3'- -GCGGCaGCc----GCGCUA-CGAGAGCA----------UGG- -5'
12957 5' -57.4 NC_003387.1 + 14467 0.7 0.413667
Target:  5'- -uCCGUUGGCuGCGuGUGCUgCUCGgcgagGCCa -3'
miRNA:   3'- gcGGCAGCCG-CGC-UACGA-GAGCa----UGG- -5'
12957 5' -57.4 NC_003387.1 + 23483 0.69 0.422871
Target:  5'- cCGCCGuUCGaGCG-GcgGUUCUgGUGCCc -3'
miRNA:   3'- -GCGGC-AGC-CGCgCuaCGAGAgCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 48834 0.69 0.451203
Target:  5'- uGCUGcUCGGCGCGAcGCacggCGUGCa -3'
miRNA:   3'- gCGGC-AGCCGCGCUaCGaga-GCAUGg -5'
12957 5' -57.4 NC_003387.1 + 43842 0.68 0.500611
Target:  5'- gGCCGaggUCGGgGCGGUGCaccaGUGCUa -3'
miRNA:   3'- gCGGC---AGCCgCGCUACGagagCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 11408 0.68 0.490529
Target:  5'- gGCCGcgaUCGGCcccgaGGUGCUgucgucggugCUCGUGCCc -3'
miRNA:   3'- gCGGC---AGCCGcg---CUACGA----------GAGCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 29639 0.69 0.441642
Target:  5'- aCGCgCGaCGGCGCGAguaaccgGCUgCUCGaacGCCu -3'
miRNA:   3'- -GCG-GCaGCCGCGCUa------CGA-GAGCa--UGG- -5'
12957 5' -57.4 NC_003387.1 + 37295 0.74 0.226813
Target:  5'- gCGCuCGUCGGCGCGGUcgucgaccGCgccgaCGUGCCg -3'
miRNA:   3'- -GCG-GCAGCCGCGCUA--------CGaga--GCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 32496 0.68 0.490529
Target:  5'- gCGCCGU-GGUGCGAcgacUGCcgCUgCGUGCa -3'
miRNA:   3'- -GCGGCAgCCGCGCU----ACGa-GA-GCAUGg -5'
12957 5' -57.4 NC_003387.1 + 26711 0.71 0.328774
Target:  5'- aCGCCGUCGuGCGCGgcGCgagcuggaUCGcgACCc -3'
miRNA:   3'- -GCGGCAGC-CGCGCuaCGag------AGCa-UGG- -5'
12957 5' -57.4 NC_003387.1 + 26121 0.69 0.432197
Target:  5'- gCGCCagGUCGGCGCGuccgucGCcgCUCGcgcgGCCu -3'
miRNA:   3'- -GCGG--CAGCCGCGCua----CGa-GAGCa---UGG- -5'
12957 5' -57.4 NC_003387.1 + 174 0.68 0.500611
Target:  5'- gGCCGaCGGCaagaCGGUGCUCgacUCGgcCCg -3'
miRNA:   3'- gCGGCaGCCGc---GCUACGAG---AGCauGG- -5'
12957 5' -57.4 NC_003387.1 + 36398 0.68 0.510783
Target:  5'- cCGCgGUcaacaucgacacCGGCGcCGAgcUGCaUUUCGUGCCg -3'
miRNA:   3'- -GCGgCA------------GCCGC-GCU--ACG-AGAGCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 41756 0.7 0.369556
Target:  5'- gGCCG-CGGUGUGGUGCgacCUCGacgucaaGCCg -3'
miRNA:   3'- gCGGCaGCCGCGCUACGa--GAGCa------UGG- -5'
12957 5' -57.4 NC_003387.1 + 10045 0.7 0.413667
Target:  5'- gCGCCGagGGCGCGGUGUcggccgguaUCacggCGgcgACCa -3'
miRNA:   3'- -GCGGCagCCGCGCUACG---------AGa---GCa--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.