miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12960 5' -54.5 NC_003387.1 + 36947 1.07 0.001427
Target:  5'- uUUCACGGUUUCACCGCCAACCGCAGGc -3'
miRNA:   3'- -AAGUGCCAAAGUGGCGGUUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 38617 0.76 0.211854
Target:  5'- -cCACuuggUCGCCGUCGACCGCAGGu -3'
miRNA:   3'- aaGUGccaaAGUGGCGGUUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 2935 0.76 0.229493
Target:  5'- gUCGCGG-UUCGgCGCCAACCcGCAGc -3'
miRNA:   3'- aAGUGCCaAAGUgGCGGUUGG-CGUCc -5'
12960 5' -54.5 NC_003387.1 + 11479 0.75 0.268487
Target:  5'- gUCACGaccuugUCGCCGCCAugcACCGCGGa -3'
miRNA:   3'- aAGUGCcaa---AGUGGCGGU---UGGCGUCc -5'
12960 5' -54.5 NC_003387.1 + 25179 0.73 0.345042
Target:  5'- -gCGCGGUggccccggCGCCGCCG-CCGCGGc -3'
miRNA:   3'- aaGUGCCAaa------GUGGCGGUuGGCGUCc -5'
12960 5' -54.5 NC_003387.1 + 15351 0.72 0.407309
Target:  5'- --aGCGGgg-CGCCGCCGcCCGaCAGGu -3'
miRNA:   3'- aagUGCCaaaGUGGCGGUuGGC-GUCC- -5'
12960 5' -54.5 NC_003387.1 + 31813 0.72 0.407309
Target:  5'- --aACGGg-UCGCCGCCGAUCGCAu- -3'
miRNA:   3'- aagUGCCaaAGUGGCGGUUGGCGUcc -5'
12960 5' -54.5 NC_003387.1 + 8976 0.71 0.436066
Target:  5'- -gCGCGGU---GCCGCCAACacgcuCGCGGGc -3'
miRNA:   3'- aaGUGCCAaagUGGCGGUUG-----GCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 24511 0.71 0.455874
Target:  5'- gUCGCGGcugCGCuUGCCgAGCUGCAGGu -3'
miRNA:   3'- aAGUGCCaaaGUG-GCGG-UUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 10872 0.71 0.465958
Target:  5'- aUCACGac--CGCCGUCGGCCGCuGGc -3'
miRNA:   3'- aAGUGCcaaaGUGGCGGUUGGCGuCC- -5'
12960 5' -54.5 NC_003387.1 + 27639 0.7 0.476156
Target:  5'- aUCGCGGccugcguguucacgUCauagacgccgcugGCCGUCAGCCGCGGGu -3'
miRNA:   3'- aAGUGCCaa------------AG-------------UGGCGGUUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 44504 0.7 0.476156
Target:  5'- cUCACGGcaguugcgUCuguucgugccggGCCGCCcggcGCCGCAGGg -3'
miRNA:   3'- aAGUGCCaa------AG------------UGGCGGu---UGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 48561 0.7 0.496878
Target:  5'- gUUGCGGUcuggCACCGCCAggcACaCGCAGu -3'
miRNA:   3'- aAGUGCCAaa--GUGGCGGU---UG-GCGUCc -5'
12960 5' -54.5 NC_003387.1 + 52258 0.7 0.496878
Target:  5'- cUCGCGccggUCGCCGUCGGCCGCcgcGGc -3'
miRNA:   3'- aAGUGCcaa-AGUGGCGGUUGGCGu--CC- -5'
12960 5' -54.5 NC_003387.1 + 30917 0.7 0.506334
Target:  5'- -cCACGGcgUCGCuCGCCGagcugccGCCGCGGu -3'
miRNA:   3'- aaGUGCCaaAGUG-GCGGU-------UGGCGUCc -5'
12960 5' -54.5 NC_003387.1 + 6715 0.69 0.528688
Target:  5'- -cCGCGGgcagUUCACCGUCGACuCGCc-- -3'
miRNA:   3'- aaGUGCCa---AAGUGGCGGUUG-GCGucc -5'
12960 5' -54.5 NC_003387.1 + 52536 0.69 0.528688
Target:  5'- gUCGCGGgccgagUCgagcaccgucuuGCCGUCGGCCaGCAGGc -3'
miRNA:   3'- aAGUGCCaa----AG------------UGGCGGUUGG-CGUCC- -5'
12960 5' -54.5 NC_003387.1 + 24766 0.69 0.550307
Target:  5'- cUCGCGGUcgaUCGCCacgaGCCGgaACCGCucGGGg -3'
miRNA:   3'- aAGUGCCAa--AGUGG----CGGU--UGGCG--UCC- -5'
12960 5' -54.5 NC_003387.1 + 6904 0.69 0.56122
Target:  5'- gUCGCGG----GCCaUCAGCCGCGGGa -3'
miRNA:   3'- aAGUGCCaaagUGGcGGUUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 45598 0.68 0.594275
Target:  5'- cUCGCGuGgcUgAUCGaCCGGCUGCAGGa -3'
miRNA:   3'- aAGUGC-CaaAgUGGC-GGUUGGCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.