miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12960 5' -54.5 NC_003387.1 + 36947 1.07 0.001427
Target:  5'- uUUCACGGUUUCACCGCCAACCGCAGGc -3'
miRNA:   3'- -AAGUGCCAAAGUGGCGGUUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 9849 0.67 0.69414
Target:  5'- uUUCGCc---UCGCCGCCGggcACCGCGGu -3'
miRNA:   3'- -AAGUGccaaAGUGGCGGU---UGGCGUCc -5'
12960 5' -54.5 NC_003387.1 + 4013 0.67 0.661006
Target:  5'- -gCACGGUgcUCGacaaCGCCAAgCGCgAGGg -3'
miRNA:   3'- aaGUGCCAa-AGUg---GCGGUUgGCG-UCC- -5'
12960 5' -54.5 NC_003387.1 + 47456 0.67 0.649892
Target:  5'- gUUUACGGcgagucggcuguUgagUUCGCCGUCGGCCaGCGGGu -3'
miRNA:   3'- -AAGUGCC------------A---AAGUGGCGGUUGG-CGUCC- -5'
12960 5' -54.5 NC_003387.1 + 33375 0.68 0.617603
Target:  5'- aUCGCGGgcggaugggaCGCC-GCCGCAGGc -3'
miRNA:   3'- aAGUGCCaaagug----GCGGuUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 45598 0.68 0.594275
Target:  5'- cUCGCGuGgcUgAUCGaCCGGCUGCAGGa -3'
miRNA:   3'- aAGUGC-CaaAgUGGC-GGUUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 31676 0.66 0.758433
Target:  5'- -aCGCGGcgUUCGaCGCCGACUGguCAGGc -3'
miRNA:   3'- aaGUGCCa-AAGUgGCGGUUGGC--GUCC- -5'
12960 5' -54.5 NC_003387.1 + 438 0.66 0.725647
Target:  5'- aUgGCGGUUaagucugUCGCCGCCGcggcgGCCGaCGGc -3'
miRNA:   3'- aAgUGCCAA-------AGUGGCGGU-----UGGC-GUCc -5'
12960 5' -54.5 NC_003387.1 + 15251 0.67 0.690847
Target:  5'- -gCACGG--UCGCCGCCGagaagucggucgacGCCG-AGGa -3'
miRNA:   3'- aaGUGCCaaAGUGGCGGU--------------UGGCgUCC- -5'
12960 5' -54.5 NC_003387.1 + 37604 0.68 0.634306
Target:  5'- aUCAUGGUgcacccgcaccgCACUGCCGagguaaucgccGCCGCAGu -3'
miRNA:   3'- aAGUGCCAaa----------GUGGCGGU-----------UGGCGUCc -5'
12960 5' -54.5 NC_003387.1 + 2935 0.76 0.229493
Target:  5'- gUCGCGG-UUCGgCGCCAACCcGCAGc -3'
miRNA:   3'- aAGUGCCaAAGUgGCGGUUGG-CGUCc -5'
12960 5' -54.5 NC_003387.1 + 8632 0.66 0.726721
Target:  5'- gUUCGCGGccUCGCCGUCugaccucgaAACCGUuGGc -3'
miRNA:   3'- -AAGUGCCaaAGUGGCGG---------UUGGCGuCC- -5'
12960 5' -54.5 NC_003387.1 + 25179 0.73 0.345042
Target:  5'- -gCGCGGUggccccggCGCCGCCG-CCGCGGc -3'
miRNA:   3'- aaGUGCCAaa------GUGGCGGUuGGCGUCc -5'
12960 5' -54.5 NC_003387.1 + 39473 0.67 0.683142
Target:  5'- -gCGCGGUgggaaAUCGCCAugCGCAc- -3'
miRNA:   3'- aaGUGCCAaag--UGGCGGUugGCGUcc -5'
12960 5' -54.5 NC_003387.1 + 15005 0.66 0.726721
Target:  5'- aUCAaGGUgUCGCaCaCCAACCcGCAGGg -3'
miRNA:   3'- aAGUgCCAaAGUG-GcGGUUGG-CGUCC- -5'
12960 5' -54.5 NC_003387.1 + 44504 0.7 0.476156
Target:  5'- cUCACGGcaguugcgUCuguucgugccggGCCGCCcggcGCCGCAGGg -3'
miRNA:   3'- aAGUGCCaa------AG------------UGGCGGu---UGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 48704 0.66 0.709433
Target:  5'- -aCGCGGUucUuuugggccuggcugaUCGCCGCCAcgGCCGCcucaauccucGGGa -3'
miRNA:   3'- aaGUGCCA--A---------------AGUGGCGGU--UGGCG----------UCC- -5'
12960 5' -54.5 NC_003387.1 + 18218 0.67 0.69414
Target:  5'- aUCGCGG---CGCCG-CAGCgGCGGGc -3'
miRNA:   3'- aAGUGCCaaaGUGGCgGUUGgCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 15726 0.66 0.705077
Target:  5'- -aCGCGGaacccgCGCCGgaUCAGCCGCAGc -3'
miRNA:   3'- aaGUGCCaaa---GUGGC--GGUUGGCGUCc -5'
12960 5' -54.5 NC_003387.1 + 4550 0.66 0.715942
Target:  5'- cUUGCGGgccugCGCCuGCgCGACCGCGcGGg -3'
miRNA:   3'- aAGUGCCaaa--GUGG-CG-GUUGGCGU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.