miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12960 5' -54.5 NC_003387.1 + 438 0.66 0.725647
Target:  5'- aUgGCGGUUaagucugUCGCCGCCGcggcgGCCGaCGGc -3'
miRNA:   3'- aAgUGCCAA-------AGUGGCGGU-----UGGC-GUCc -5'
12960 5' -54.5 NC_003387.1 + 1284 0.66 0.723497
Target:  5'- -gCGCGGcgUUCgACCGgCGcaguucgaggcggcGCCGCAGGc -3'
miRNA:   3'- aaGUGCCa-AAG-UGGCgGU--------------UGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 1365 0.68 0.627623
Target:  5'- -cCACGGcaccUCGCCGUCGGCgcucaGCGGGu -3'
miRNA:   3'- aaGUGCCaa--AGUGGCGGUUGg----CGUCC- -5'
12960 5' -54.5 NC_003387.1 + 1921 0.66 0.725647
Target:  5'- -cCGCGGUgaggUCgAUCGugcagcgcaugauCCGGCCGCGGGu -3'
miRNA:   3'- aaGUGCCAa---AG-UGGC-------------GGUUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 2902 0.66 0.737404
Target:  5'- cUCGcCGGg--CGCgGCaGGCCGCGGGc -3'
miRNA:   3'- aAGU-GCCaaaGUGgCGgUUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 2935 0.76 0.229493
Target:  5'- gUCGCGG-UUCGgCGCCAACCcGCAGc -3'
miRNA:   3'- aAGUGCCaAAGUgGCGGUUGG-CGUCc -5'
12960 5' -54.5 NC_003387.1 + 4013 0.67 0.661006
Target:  5'- -gCACGGUgcUCGacaaCGCCAAgCGCgAGGg -3'
miRNA:   3'- aaGUGCCAa-AGUg---GCGGUUgGCG-UCC- -5'
12960 5' -54.5 NC_003387.1 + 4550 0.66 0.715942
Target:  5'- cUUGCGGgccugCGCCuGCgCGACCGCGcGGg -3'
miRNA:   3'- aAGUGCCaaa--GUGG-CG-GUUGGCGU-CC- -5'
12960 5' -54.5 NC_003387.1 + 6715 0.69 0.528688
Target:  5'- -cCGCGGgcagUUCACCGUCGACuCGCc-- -3'
miRNA:   3'- aaGUGCCa---AAGUGGCGGUUG-GCGucc -5'
12960 5' -54.5 NC_003387.1 + 6904 0.69 0.56122
Target:  5'- gUCGCGG----GCCaUCAGCCGCGGGa -3'
miRNA:   3'- aAGUGCCaaagUGGcGGUUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 8632 0.66 0.726721
Target:  5'- gUUCGCGGccUCGCCGUCugaccucgaAACCGUuGGc -3'
miRNA:   3'- -AAGUGCCaaAGUGGCGG---------UUGGCGuCC- -5'
12960 5' -54.5 NC_003387.1 + 8769 0.67 0.649892
Target:  5'- --uGCGGgccUUCGCCGUgCGGCgGCGGGc -3'
miRNA:   3'- aagUGCCa--AAGUGGCG-GUUGgCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 8976 0.71 0.436066
Target:  5'- -gCGCGGU---GCCGCCAACacgcuCGCGGGc -3'
miRNA:   3'- aaGUGCCAaagUGGCGGUUG-----GCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 9849 0.67 0.69414
Target:  5'- uUUCGCc---UCGCCGCCGggcACCGCGGu -3'
miRNA:   3'- -AAGUGccaaAGUGGCGGU---UGGCGUCc -5'
12960 5' -54.5 NC_003387.1 + 10872 0.71 0.465958
Target:  5'- aUCACGac--CGCCGUCGGCCGCuGGc -3'
miRNA:   3'- aAGUGCcaaaGUGGCGGUUGGCGuCC- -5'
12960 5' -54.5 NC_003387.1 + 11479 0.75 0.268487
Target:  5'- gUCACGaccuugUCGCCGCCAugcACCGCGGa -3'
miRNA:   3'- aAGUGCcaa---AGUGGCGGU---UGGCGUCc -5'
12960 5' -54.5 NC_003387.1 + 13500 0.67 0.683142
Target:  5'- -gCGcCGGUacccgcuccCACUGcCCGACCGCGGGg -3'
miRNA:   3'- aaGU-GCCAaa-------GUGGC-GGUUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 14296 0.67 0.661006
Target:  5'- cUUCuuGGg--CACCagcGCCAGCCGCucGGGg -3'
miRNA:   3'- -AAGugCCaaaGUGG---CGGUUGGCG--UCC- -5'
12960 5' -54.5 NC_003387.1 + 14849 0.68 0.61649
Target:  5'- -aCGCGGUcaaguucaagcaucgUCgaggcgaGCCGCCGGgCGCAGGg -3'
miRNA:   3'- aaGUGCCAa--------------AG-------UGGCGGUUgGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 14918 0.66 0.726721
Target:  5'- aUCGCG----CGCUGCUgcGACCGCGGGu -3'
miRNA:   3'- aAGUGCcaaaGUGGCGG--UUGGCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.