miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12975 3' -65.4 NC_003387.1 + 51124 0.7 0.11251
Target:  5'- cGCCCGGCCgaacaugccagggCGcGUCUGACuuucacgacggggGGCGCCGGu -3'
miRNA:   3'- -CGGGCCGG-------------GC-CGGACUG-------------UCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 25504 0.7 0.116167
Target:  5'- aGCUCGGCCgGGUCgaccgcaGACuuGCGCCGGu -3'
miRNA:   3'- -CGGGCCGGgCCGGa------CUGu-CGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 33263 0.7 0.116167
Target:  5'- cGUCCuGCCCGGCCUGc---CGCCGAu -3'
miRNA:   3'- -CGGGcCGGGCCGGACugucGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 13500 0.7 0.118666
Target:  5'- cCCCGGCggguucgCCGGUggagucgCUGACAGCGUCGGc -3'
miRNA:   3'- cGGGCCG-------GGCCG-------GACUGUCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 7138 0.7 0.119299
Target:  5'- aGCCacgcgaGGCCCGGCUccucGGCcGUGCCGAc -3'
miRNA:   3'- -CGGg-----CCGGGCCGGa---CUGuCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 40435 0.7 0.12251
Target:  5'- uGCCCGGCCCG--CUGAUccGGCcGCCGGu -3'
miRNA:   3'- -CGGGCCGGGCcgGACUG--UCG-CGGCUu -5'
12975 3' -65.4 NC_003387.1 + 52569 0.7 0.1258
Target:  5'- gGCCagcaGGCCCaGCUcGGCGGCGCgGAu -3'
miRNA:   3'- -CGGg---CCGGGcCGGaCUGUCGCGgCUu -5'
12975 3' -65.4 NC_003387.1 + 1244 0.7 0.129173
Target:  5'- uGCCCGGUCUGGCgUucGCGGUGUCGGu -3'
miRNA:   3'- -CGGGCCGGGCCGgAc-UGUCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 14168 0.69 0.132279
Target:  5'- cGCCgGGCCgGGCCgcgggcgUGAgGGCGUCGu- -3'
miRNA:   3'- -CGGgCCGGgCCGG-------ACUgUCGCGGCuu -5'
12975 3' -65.4 NC_003387.1 + 22972 0.69 0.132628
Target:  5'- cCCCGGUcaUCGuGUCgGGCGGCGCCGAc -3'
miRNA:   3'- cGGGCCG--GGC-CGGaCUGUCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 27959 0.69 0.136169
Target:  5'- cGCUCGGCgugcUCGGCUUGGcCGGUGCCGu- -3'
miRNA:   3'- -CGGGCCG----GGCCGGACU-GUCGCGGCuu -5'
12975 3' -65.4 NC_003387.1 + 12457 0.69 0.139796
Target:  5'- cGCUggcggCGGCCUGGCCgcgGGCcuGGCGuCCGAGc -3'
miRNA:   3'- -CGG-----GCCGGGCCGGa--CUG--UCGC-GGCUU- -5'
12975 3' -65.4 NC_003387.1 + 38891 0.69 0.139796
Target:  5'- cGCUCGGCaaGGgCUGGUGGCGCUGAGu -3'
miRNA:   3'- -CGGGCCGggCCgGACUGUCGCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 21989 0.69 0.139796
Target:  5'- cGCCCGGugauCCCGGCCaguaucaggccgUGACgcuagagcgcGGCGUCGAc -3'
miRNA:   3'- -CGGGCC----GGGCCGG------------ACUG----------UCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 52116 0.69 0.147318
Target:  5'- cGCCCuGCUCGGCCUGA--GCGUCa-- -3'
miRNA:   3'- -CGGGcCGGGCCGGACUguCGCGGcuu -5'
12975 3' -65.4 NC_003387.1 + 44639 0.68 0.154
Target:  5'- gGCCCuGGCCgCGGCCUcGGCgauccuggccgaggGGCuGCCGGu -3'
miRNA:   3'- -CGGG-CCGG-GCCGGA-CUG--------------UCG-CGGCUu -5'
12975 3' -65.4 NC_003387.1 + 33783 0.68 0.155207
Target:  5'- gGUuuGGCCCGGCU----GGUGCCGAc -3'
miRNA:   3'- -CGggCCGGGCCGGacugUCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 50773 0.68 0.15888
Target:  5'- uGCCCGGCCagacccgCGGCCgGAUcauGCGCUGc- -3'
miRNA:   3'- -CGGGCCGG-------GCCGGaCUGu--CGCGGCuu -5'
12975 3' -65.4 NC_003387.1 + 46674 0.68 0.159293
Target:  5'- uGCuuGGCCgCGGCCa-GCAGCGuguCCGAGu -3'
miRNA:   3'- -CGggCCGG-GCCGGacUGUCGC---GGCUU- -5'
12975 3' -65.4 NC_003387.1 + 4339 0.68 0.160955
Target:  5'- cGCCCGGCCCGcuugcgaaugugguuGCCcuUGGC-GCGCuCGGc -3'
miRNA:   3'- -CGGGCCGGGC---------------CGG--ACUGuCGCG-GCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.