miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12975 3' -65.4 NC_003387.1 + 40438 1.07 0.000141
Target:  5'- gGCCCGGCCCGGCCUGACAGCGCCGAAg -3'
miRNA:   3'- -CGGGCCGGGCCGGACUGUCGCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 46304 0.76 0.040061
Target:  5'- gGCCUGGCCCgcagucaccgcGGCCgGAauCAGCGCCGGGg -3'
miRNA:   3'- -CGGGCCGGG-----------CCGGaCU--GUCGCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 44728 0.74 0.054312
Target:  5'- uGCCUcGCCCGGCCgg--GGCGCCGAAg -3'
miRNA:   3'- -CGGGcCGGGCCGGacugUCGCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 38558 0.74 0.057387
Target:  5'- cGCCCgcGGCCCGGCCcGGCgaGGUGCCa-- -3'
miRNA:   3'- -CGGG--CCGGGCCGGaCUG--UCGCGGcuu -5'
12975 3' -65.4 NC_003387.1 + 31246 0.74 0.060631
Target:  5'- aGCCCGGCCCGaCCggcgcgGGCuGCGCCa-- -3'
miRNA:   3'- -CGGGCCGGGCcGGa-----CUGuCGCGGcuu -5'
12975 3' -65.4 NC_003387.1 + 41692 0.74 0.060631
Target:  5'- aCCCGaCCCGGCgUcGCGGCGCCGAc -3'
miRNA:   3'- cGGGCcGGGCCGgAcUGUCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 1954 0.74 0.064051
Target:  5'- gGCCgCgGGUCUGGCCgGGCAGCGCCa-- -3'
miRNA:   3'- -CGG-G-CCGGGCCGGaCUGUCGCGGcuu -5'
12975 3' -65.4 NC_003387.1 + 17732 0.74 0.064051
Target:  5'- cCCCGGCCCGGCCgGGCcgccaGGgGCCa-- -3'
miRNA:   3'- cGGGCCGGGCCGGaCUG-----UCgCGGcuu -5'
12975 3' -65.4 NC_003387.1 + 8111 0.73 0.065831
Target:  5'- cGCUCGcGCCaCGGCCcGACGGCGUCGc- -3'
miRNA:   3'- -CGGGC-CGG-GCCGGaCUGUCGCGGCuu -5'
12975 3' -65.4 NC_003387.1 + 3665 0.73 0.067657
Target:  5'- cCCCGGCUgagCGGCCUGACcgAG-GCCGAGg -3'
miRNA:   3'- cGGGCCGG---GCCGGACUG--UCgCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 11343 0.72 0.086444
Target:  5'- cGCCCGGCgCuCGGCCUcacgcuCGGCGUCGGc -3'
miRNA:   3'- -CGGGCCG-G-GCCGGAcu----GUCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 19174 0.72 0.086444
Target:  5'- uGCCUuGUCUaucaacGCCUGGCAGCGCCGAAu -3'
miRNA:   3'- -CGGGcCGGGc-----CGGACUGUCGCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 49581 0.72 0.086444
Target:  5'- cGCCCGcuGCCgggcggUGGCCUGGCAGUGCUGc- -3'
miRNA:   3'- -CGGGC--CGG------GCCGGACUGUCGCGGCuu -5'
12975 3' -65.4 NC_003387.1 + 23137 0.72 0.091249
Target:  5'- cGCCCGGCuCCGGCCccuCGGCcUCGAAg -3'
miRNA:   3'- -CGGGCCG-GGCCGGacuGUCGcGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 42419 0.71 0.096306
Target:  5'- uGCCCGcGuCCUGGCCUG-C-GCGCUGAGc -3'
miRNA:   3'- -CGGGC-C-GGGCCGGACuGuCGCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 38150 0.71 0.101628
Target:  5'- cGCuuGGCguagaaCGGCCaGGCGGCGUCGAc -3'
miRNA:   3'- -CGggCCGg-----GCCGGaCUGUCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 34997 0.71 0.101628
Target:  5'- gGCCCGGCCgGGCCggGGCGcacCGCCu-- -3'
miRNA:   3'- -CGGGCCGGgCCGGa-CUGUc--GCGGcuu -5'
12975 3' -65.4 NC_003387.1 + 22302 0.71 0.104391
Target:  5'- aCCCGGCaaGccGCCUGGUGGCGCCGGAu -3'
miRNA:   3'- cGGGCCGggC--CGGACUGUCGCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 30287 0.71 0.105516
Target:  5'- cGCCgCGGCCCGcGCCUGGgacgacgcgcauuacCAGgGCUGGc -3'
miRNA:   3'- -CGG-GCCGGGC-CGGACU---------------GUCgCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 6124 0.7 0.110132
Target:  5'- uGCgCGGCagCGGCUUGAgGGCGCCa-- -3'
miRNA:   3'- -CGgGCCGg-GCCGGACUgUCGCGGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.