miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12975 3' -65.4 NC_003387.1 + 1244 0.7 0.129173
Target:  5'- uGCCCGGUCUGGCgUucGCGGUGUCGGu -3'
miRNA:   3'- -CGGGCCGGGCCGgAc-UGUCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 1761 0.68 0.176624
Target:  5'- aGCCCGGCggCGGCgCUGGC-GC-CCGAGc -3'
miRNA:   3'- -CGGGCCGg-GCCG-GACUGuCGcGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 1954 0.74 0.064051
Target:  5'- gGCCgCgGGUCUGGCCgGGCAGCGCCa-- -3'
miRNA:   3'- -CGG-G-CCGGGCCGGaCUGUCGCGGcuu -5'
12975 3' -65.4 NC_003387.1 + 2032 0.66 0.244312
Target:  5'- cGCCgaCGGCCgccgucgccgagcUGGCCgcggUGGCGGCGCCa-- -3'
miRNA:   3'- -CGG--GCCGG-------------GCCGG----ACUGUCGCGGcuu -5'
12975 3' -65.4 NC_003387.1 + 2472 0.68 0.17214
Target:  5'- uGCaCC-GCCCGGCgCUGACguacGGCGCCu-- -3'
miRNA:   3'- -CG-GGcCGGGCCG-GACUG----UCGCGGcuu -5'
12975 3' -65.4 NC_003387.1 + 3665 0.73 0.067657
Target:  5'- cCCCGGCUgagCGGCCUGACcgAG-GCCGAGg -3'
miRNA:   3'- cGGGCCGG---GCCGGACUG--UCgCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 3841 0.67 0.211001
Target:  5'- --gCGGCgCGGUa-GGCGGCGCCGAc -3'
miRNA:   3'- cggGCCGgGCCGgaCUGUCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 3936 0.68 0.17214
Target:  5'- cGCCgCGGCgaucagCGGCgagCUGGCuGCGCCGAGc -3'
miRNA:   3'- -CGG-GCCGg-----GCCG---GACUGuCGCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 4339 0.68 0.160955
Target:  5'- cGCCCGGCCCGcuugcgaaugugguuGCCcuUGGC-GCGCuCGGc -3'
miRNA:   3'- -CGGGCCGGGC---------------CGG--ACUGuCGCG-GCUu -5'
12975 3' -65.4 NC_003387.1 + 4926 0.66 0.247327
Target:  5'- uGCCCGGCgCGGCguCgcgcguugucgaacgUGACAGaccaGCCGGu -3'
miRNA:   3'- -CGGGCCGgGCCG--G---------------ACUGUCg---CGGCUu -5'
12975 3' -65.4 NC_003387.1 + 5699 0.66 0.244913
Target:  5'- uGCCCGGCCgGGCCgccaaUGAa---GUCGAGc -3'
miRNA:   3'- -CGGGCCGGgCCGG-----ACUgucgCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 6124 0.7 0.110132
Target:  5'- uGCgCGGCagCGGCUUGAgGGCGCCa-- -3'
miRNA:   3'- -CGgGCCGg-GCCGGACUgUCGCGGcuu -5'
12975 3' -65.4 NC_003387.1 + 6368 0.68 0.181211
Target:  5'- cGCuuGGCCuCGGCCgcgGGCGaCGCCu-- -3'
miRNA:   3'- -CGggCCGG-GCCGGa--CUGUcGCGGcuu -5'
12975 3' -65.4 NC_003387.1 + 6931 0.66 0.221279
Target:  5'- -gUCGGCCaucaucgCGGCCUGcGCAGCGgCGGg -3'
miRNA:   3'- cgGGCCGG-------GCCGGAC-UGUCGCgGCUu -5'
12975 3' -65.4 NC_003387.1 + 7049 0.68 0.167758
Target:  5'- gGCCCGGCCgcuCGcCCUGACcggacaccuucGGCGCCa-- -3'
miRNA:   3'- -CGGGCCGG---GCcGGACUG-----------UCGCGGcuu -5'
12975 3' -65.4 NC_003387.1 + 7138 0.7 0.119299
Target:  5'- aGCCacgcgaGGCCCGGCUccucGGCcGUGCCGAc -3'
miRNA:   3'- -CGGg-----CCGGGCCGGa---CUGuCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 7769 0.68 0.167326
Target:  5'- gGCCUGaGCCgCGGCCUGagccuucGCgAGCGCCu-- -3'
miRNA:   3'- -CGGGC-CGG-GCCGGAC-------UG-UCGCGGcuu -5'
12975 3' -65.4 NC_003387.1 + 8111 0.73 0.065831
Target:  5'- cGCUCGcGCCaCGGCCcGACGGCGUCGc- -3'
miRNA:   3'- -CGGGC-CGG-GCCGGaCUGUCGCGGCuu -5'
12975 3' -65.4 NC_003387.1 + 8137 0.66 0.238961
Target:  5'- -gCUGuCCCGGCCgGGCAGCGaCCGc- -3'
miRNA:   3'- cgGGCcGGGCCGGaCUGUCGC-GGCuu -5'
12975 3' -65.4 NC_003387.1 + 10517 0.67 0.211001
Target:  5'- cGCUCGGCUCGGCgaUG-CGG-GCCGGGu -3'
miRNA:   3'- -CGGGCCGGGCCGg-ACuGUCgCGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.