miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12975 3' -65.4 NC_003387.1 + 40438 1.07 0.000141
Target:  5'- gGCCCGGCCCGGCCUGACAGCGCCGAAg -3'
miRNA:   3'- -CGGGCCGGGCCGGACUGUCGCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 33783 0.68 0.155207
Target:  5'- gGUuuGGCCCGGCU----GGUGCCGAc -3'
miRNA:   3'- -CGggCCGGGCCGGacugUCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 30008 0.68 0.171697
Target:  5'- cGCCCGacuggucgguaucGCCCaGGCCgc-CAGCGCCGc- -3'
miRNA:   3'- -CGGGC-------------CGGG-CCGGacuGUCGCGGCuu -5'
12975 3' -65.4 NC_003387.1 + 12275 0.66 0.250986
Target:  5'- cGCCUGGCgaccggCGGCCgGAuCAGCggGCCGGg -3'
miRNA:   3'- -CGGGCCGg-----GCCGGaCU-GUCG--CGGCUu -5'
12975 3' -65.4 NC_003387.1 + 3665 0.73 0.067657
Target:  5'- cCCCGGCUgagCGGCCUGACcgAG-GCCGAGg -3'
miRNA:   3'- cGGGCCGG---GCCGGACUG--UCgCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 49581 0.72 0.086444
Target:  5'- cGCCCGcuGCCgggcggUGGCCUGGCAGUGCUGc- -3'
miRNA:   3'- -CGGGC--CGG------GCCGGACUGUCGCGGCuu -5'
12975 3' -65.4 NC_003387.1 + 30287 0.71 0.105516
Target:  5'- cGCCgCGGCCCGcGCCUGGgacgacgcgcauuacCAGgGCUGGc -3'
miRNA:   3'- -CGG-GCCGGGC-CGGACU---------------GUCgCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 51124 0.7 0.11251
Target:  5'- cGCCCGGCCgaacaugccagggCGcGUCUGACuuucacgacggggGGCGCCGGu -3'
miRNA:   3'- -CGGGCCGG-------------GC-CGGACUG-------------UCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 14168 0.69 0.132279
Target:  5'- cGCCgGGCCgGGCCgcgggcgUGAgGGCGUCGu- -3'
miRNA:   3'- -CGGgCCGGgCCGG-------ACUgUCGCGGCuu -5'
12975 3' -65.4 NC_003387.1 + 44639 0.68 0.154
Target:  5'- gGCCCuGGCCgCGGCCUcGGCgauccuggccgaggGGCuGCCGGu -3'
miRNA:   3'- -CGGG-CCGG-GCCGGA-CUG--------------UCG-CGGCUu -5'
12975 3' -65.4 NC_003387.1 + 38891 0.69 0.139796
Target:  5'- cGCUCGGCaaGGgCUGGUGGCGCUGAGu -3'
miRNA:   3'- -CGGGCCGggCCgGACUGUCGCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 13500 0.7 0.118666
Target:  5'- cCCCGGCggguucgCCGGUggagucgCUGACAGCGUCGGc -3'
miRNA:   3'- cGGGCCG-------GGCCG-------GACUGUCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 44728 0.74 0.054312
Target:  5'- uGCCUcGCCCGGCCgg--GGCGCCGAAg -3'
miRNA:   3'- -CGGGcCGGGCCGGacugUCGCGGCUU- -5'
12975 3' -65.4 NC_003387.1 + 12457 0.69 0.139796
Target:  5'- cGCUggcggCGGCCUGGCCgcgGGCcuGGCGuCCGAGc -3'
miRNA:   3'- -CGG-----GCCGGGCCGGa--CUG--UCGC-GGCUU- -5'
12975 3' -65.4 NC_003387.1 + 41692 0.74 0.060631
Target:  5'- aCCCGaCCCGGCgUcGCGGCGCCGAc -3'
miRNA:   3'- cGGGCcGGGCCGgAcUGUCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 33263 0.7 0.116167
Target:  5'- cGUCCuGCCCGGCCUGc---CGCCGAu -3'
miRNA:   3'- -CGGGcCGGGCCGGACugucGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 21989 0.69 0.139796
Target:  5'- cGCCCGGugauCCCGGCCaguaucaggccgUGACgcuagagcgcGGCGUCGAc -3'
miRNA:   3'- -CGGGCC----GGGCCGG------------ACUG----------UCGCGGCUu -5'
12975 3' -65.4 NC_003387.1 + 50773 0.68 0.15888
Target:  5'- uGCCCGGCCagacccgCGGCCgGAUcauGCGCUGc- -3'
miRNA:   3'- -CGGGCCGG-------GCCGGaCUGu--CGCGGCuu -5'
12975 3' -65.4 NC_003387.1 + 17732 0.74 0.064051
Target:  5'- cCCCGGCCCGGCCgGGCcgccaGGgGCCa-- -3'
miRNA:   3'- cGGGCCGGGCCGGaCUG-----UCgCGGcuu -5'
12975 3' -65.4 NC_003387.1 + 22302 0.71 0.104391
Target:  5'- aCCCGGCaaGccGCCUGGUGGCGCCGGAu -3'
miRNA:   3'- cGGGCCGggC--CGGACUGUCGCGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.