Results 1 - 20 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12975 | 5' | -54.9 | NC_003387.1 | + | 18464 | 0.66 | 0.737483 |
Target: 5'- aCGCCcgacucgGCgAUCAgccGGUCGAGCGCCc -3' miRNA: 3'- -GCGGuuca---UG-UAGU---UCGGCUCGCGGc -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 21577 | 0.66 | 0.716115 |
Target: 5'- gGCCcAGgcgcgcgGCAUCAgcgaGGCCGAcgcgGCGCUGc -3' miRNA: 3'- gCGGuUCa------UGUAGU----UCGGCU----CGCGGC- -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 28129 | 0.66 | 0.716115 |
Target: 5'- uCGCCGAGgcCcgCAAGCgccccacgauCGAGC-CCGg -3' miRNA: 3'- -GCGGUUCauGuaGUUCG----------GCUCGcGGC- -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 30440 | 0.66 | 0.737483 |
Target: 5'- gGCCGAG-GCGgu-GGCCGAgcacgGCGCCc -3' miRNA: 3'- gCGGUUCaUGUaguUCGGCU-----CGCGGc -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 45103 | 0.66 | 0.69441 |
Target: 5'- gGCCAGGU-CGUCGAcGCCGcGGUGUaCGa -3' miRNA: 3'- gCGGUUCAuGUAGUU-CGGC-UCGCG-GC- -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 30477 | 0.66 | 0.69441 |
Target: 5'- -aCCAAGUGCuUCccGUCG-GCGCCGg -3' miRNA: 3'- gcGGUUCAUGuAGuuCGGCuCGCGGC- -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 35547 | 0.66 | 0.702039 |
Target: 5'- cCGCCAGGaGCA-CGAcGCCGcgauggacuaccucGGCGCCc -3' miRNA: 3'- -GCGGUUCaUGUaGUU-CGGC--------------UCGCGGc -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 15559 | 0.66 | 0.705299 |
Target: 5'- cCGCCGgaGGUGC----AGCCGAuucGCGCCu -3' miRNA: 3'- -GCGGU--UCAUGuaguUCGGCU---CGCGGc -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 21298 | 0.66 | 0.705299 |
Target: 5'- uCGUCGAGgcCGUCGAGCaguGGCGCg- -3' miRNA: 3'- -GCGGUUCauGUAGUUCGgc-UCGCGgc -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 42430 | 0.66 | 0.693318 |
Target: 5'- cCGCaAGGU-CGUCAccgagcgguucaaGGCCGAguGCGCCGc -3' miRNA: 3'- -GCGgUUCAuGUAGU-------------UCGGCU--CGCGGC- -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 9505 | 0.66 | 0.705299 |
Target: 5'- aCGU--GGUGCGUCAccucGCCGAuCGCCGc -3' miRNA: 3'- -GCGguUCAUGUAGUu---CGGCUcGCGGC- -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 708 | 0.66 | 0.712879 |
Target: 5'- uCGCCucGU-CGUCGagGGCCGAcaggucgggcagguGCGCCa -3' miRNA: 3'- -GCGGuuCAuGUAGU--UCGGCU--------------CGCGGc -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 8175 | 0.66 | 0.737483 |
Target: 5'- aGCCcuugAAGUcuuUCGAGCCcugcGGCGCCGg -3' miRNA: 3'- gCGG----UUCAuguAGUUCGGc---UCGCGGC- -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 1514 | 0.66 | 0.737483 |
Target: 5'- gGCCGAcGUGCAggcucagcaccUCGGuGCCGAGgauCGCCa -3' miRNA: 3'- gCGGUU-CAUGU-----------AGUU-CGGCUC---GCGGc -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 32704 | 0.66 | 0.737483 |
Target: 5'- aGCCAgcaccGGaaUACGUgAGGUCGAacgGCGCCGc -3' miRNA: 3'- gCGGU-----UC--AUGUAgUUCGGCU---CGCGGC- -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 4905 | 0.66 | 0.736424 |
Target: 5'- uGCCGGGUGCGgu-AGCUGcacugcccggcgcGGCGUCGc -3' miRNA: 3'- gCGGUUCAUGUaguUCGGC-------------UCGCGGC- -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 22248 | 0.66 | 0.736424 |
Target: 5'- gCGCCGacgggaagcacuuGGUGCA-C-AGCaGGGCGCCGu -3' miRNA: 3'- -GCGGU-------------UCAUGUaGuUCGgCUCGCGGC- -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 17277 | 0.66 | 0.726847 |
Target: 5'- gCGCgCucGUccaACGUCuuuAGCCGGGUGUCGa -3' miRNA: 3'- -GCG-GuuCA---UGUAGu--UCGGCUCGCGGC- -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 44819 | 0.66 | 0.716115 |
Target: 5'- gGCCAcacGUGCGcgCGGGCaCGAGUgcgGCCGa -3' miRNA: 3'- gCGGUu--CAUGUa-GUUCG-GCUCG---CGGC- -5' |
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12975 | 5' | -54.9 | NC_003387.1 | + | 38434 | 0.66 | 0.716115 |
Target: 5'- gCGCCGcuuuuuauAGUcgacGCGcUCGGGCUuGGCGCCGa -3' miRNA: 3'- -GCGGU--------UCA----UGU-AGUUCGGcUCGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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