miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12975 5' -54.9 NC_003387.1 + 708 0.66 0.712879
Target:  5'- uCGCCucGU-CGUCGagGGCCGAcaggucgggcagguGCGCCa -3'
miRNA:   3'- -GCGGuuCAuGUAGU--UCGGCU--------------CGCGGc -5'
12975 5' -54.9 NC_003387.1 + 1327 0.72 0.354076
Target:  5'- aCGUCGGGUACGUCGAgauuuccGCCGAcgagGaCGCCGa -3'
miRNA:   3'- -GCGGUUCAUGUAGUU-------CGGCU----C-GCGGC- -5'
12975 5' -54.9 NC_003387.1 + 1482 0.71 0.408629
Target:  5'- gGCCAGG-GCGUCGAcGUCGAGCaccagGCCGc -3'
miRNA:   3'- gCGGUUCaUGUAGUU-CGGCUCG-----CGGC- -5'
12975 5' -54.9 NC_003387.1 + 1514 0.66 0.737483
Target:  5'- gGCCGAcGUGCAggcucagcaccUCGGuGCCGAGgauCGCCa -3'
miRNA:   3'- gCGGUU-CAUGU-----------AGUU-CGGCUC---GCGGc -5'
12975 5' -54.9 NC_003387.1 + 2345 0.71 0.41806
Target:  5'- uGUCGAGgccgcCGUCGGcGUCGAGCGCCa -3'
miRNA:   3'- gCGGUUCau---GUAGUU-CGGCUCGCGGc -5'
12975 5' -54.9 NC_003387.1 + 3647 0.67 0.672461
Target:  5'- aCGCCugcGcGCcgCGAGCCugcccgguGAGCGCCa -3'
miRNA:   3'- -GCGGuu-CaUGuaGUUCGG--------CUCGCGGc -5'
12975 5' -54.9 NC_003387.1 + 3889 0.72 0.354928
Target:  5'- aCGCC--GUGCGUCGcGCCGAGCaGCaCGa -3'
miRNA:   3'- -GCGGuuCAUGUAGUuCGGCUCG-CG-GC- -5'
12975 5' -54.9 NC_003387.1 + 4109 0.68 0.583958
Target:  5'- gCGCCGuGUACAagUC-GGCCGAcaccGCGCUGc -3'
miRNA:   3'- -GCGGUuCAUGU--AGuUCGGCU----CGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 4383 0.67 0.672461
Target:  5'- gGCCAGGUGCuccugauacUCGcGCuCGcGCGCCGc -3'
miRNA:   3'- gCGGUUCAUGu--------AGUuCG-GCuCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 4421 0.68 0.572981
Target:  5'- aCGCCGAGcuggGCAaggCGuucGCCGAgcccGCGCCGa -3'
miRNA:   3'- -GCGGUUCa---UGUa--GUu--CGGCU----CGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 4472 0.7 0.497944
Target:  5'- cCGCCGAGcccGCcgCGaaGGCCGAGC-CCGc -3'
miRNA:   3'- -GCGGUUCa--UGuaGU--UCGGCUCGcGGC- -5'
12975 5' -54.9 NC_003387.1 + 4531 0.67 0.661422
Target:  5'- cCGCCGccGGUGCGggcaccuugCGGGCCu-GCGCCu -3'
miRNA:   3'- -GCGGU--UCAUGUa--------GUUCGGcuCGCGGc -5'
12975 5' -54.9 NC_003387.1 + 4626 0.67 0.676866
Target:  5'- gGCCAAGgcgGCca-AGGCCGAuaaggacaaggcccgGCGCCa -3'
miRNA:   3'- gCGGUUCa--UGuagUUCGGCU---------------CGCGGc -5'
12975 5' -54.9 NC_003387.1 + 4734 0.69 0.50842
Target:  5'- gGCCGAGUcucacguguacgGCAagagugUCGAGUCGAuccgGCGCCGu -3'
miRNA:   3'- gCGGUUCA------------UGU------AGUUCGGCU----CGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 4905 0.66 0.736424
Target:  5'- uGCCGGGUGCGgu-AGCUGcacugcccggcgcGGCGUCGc -3'
miRNA:   3'- gCGGUUCAUGUaguUCGGC-------------UCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 5425 0.71 0.408629
Target:  5'- cCGCCGAGgACAacUCGA-CCGAggGCGCCGa -3'
miRNA:   3'- -GCGGUUCaUGU--AGUUcGGCU--CGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 5638 0.7 0.477289
Target:  5'- gCGCCGAG-----CAAGCCGAgaagcGCGCCGa -3'
miRNA:   3'- -GCGGUUCauguaGUUCGGCU-----CGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 6204 0.67 0.628184
Target:  5'- cCGCCGuuGGUGCAguc-GCCGAGCgaGCUGc -3'
miRNA:   3'- -GCGGU--UCAUGUaguuCGGCUCG--CGGC- -5'
12975 5' -54.9 NC_003387.1 + 7048 0.78 0.153864
Target:  5'- aGCCAGG-ACGUCAAG-CGGGCGCUGc -3'
miRNA:   3'- gCGGUUCaUGUAGUUCgGCUCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 7793 0.67 0.669153
Target:  5'- uGCCcgAGGUGCA---GGCCGAGCugcaacgccuggcgGCCGa -3'
miRNA:   3'- gCGG--UUCAUGUaguUCGGCUCG--------------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.