miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12975 5' -54.9 NC_003387.1 + 40473 1.08 0.001155
Target:  5'- gCGCCAAGUACAUCAAGCCGAGCGCCGc -3'
miRNA:   3'- -GCGGUUCAUGUAGUUCGGCUCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 41375 0.86 0.042117
Target:  5'- aCGCCGA--GCGUgAGGCCGAGCGCCGg -3'
miRNA:   3'- -GCGGUUcaUGUAgUUCGGCUCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 39410 0.79 0.141552
Target:  5'- gCGCgCGAGUGgGUCGAGgugaCCGGGCGCCGc -3'
miRNA:   3'- -GCG-GUUCAUgUAGUUC----GGCUCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 7048 0.78 0.153864
Target:  5'- aGCCAGG-ACGUCAAG-CGGGCGCUGc -3'
miRNA:   3'- gCGGUUCaUGUAGUUCgGCUCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 31001 0.78 0.16714
Target:  5'- gGCCGAGgucaGgAUCGGGCCGAgcguGCGCCGg -3'
miRNA:   3'- gCGGUUCa---UgUAGUUCGGCU----CGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 28670 0.77 0.191555
Target:  5'- gCGCCAGGUgaaucugcgaGCA-CAGGCCGAGCGaCGg -3'
miRNA:   3'- -GCGGUUCA----------UGUaGUUCGGCUCGCgGC- -5'
12975 5' -54.9 NC_003387.1 + 34633 0.75 0.230951
Target:  5'- gCGCCucgacgauGUACGUCAGGaUCGGGUGCCGc -3'
miRNA:   3'- -GCGGuu------CAUGUAGUUC-GGCUCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 41756 0.75 0.235246
Target:  5'- gGCCGcGGUguggugcgaccucgACGUCAAGCCGGGCGCg- -3'
miRNA:   3'- gCGGU-UCA--------------UGUAGUUCGGCUCGCGgc -5'
12975 5' -54.9 NC_003387.1 + 39782 0.75 0.237107
Target:  5'- aCGCCGAcGUgGCAcu--GCCGAGCGCCGa -3'
miRNA:   3'- -GCGGUU-CA-UGUaguuCGGCUCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 45062 0.75 0.237107
Target:  5'- uCGCCGAGcGCGUCGagGGCCGuccuGgGCCGg -3'
miRNA:   3'- -GCGGUUCaUGUAGU--UCGGCu---CgCGGC- -5'
12975 5' -54.9 NC_003387.1 + 42299 0.75 0.263113
Target:  5'- cCGCCGAcagccgcgagccGUACugcuuGCCGAGCGCCGa -3'
miRNA:   3'- -GCGGUU------------CAUGuaguuCGGCUCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 19993 0.75 0.263113
Target:  5'- uCGCCGAGgcCAcCGcGCCGuGCGCCGu -3'
miRNA:   3'- -GCGGUUCauGUaGUuCGGCuCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 27904 0.74 0.284104
Target:  5'- cCGcCCGAGUACGcCGAGCUGcuGCGCCa -3'
miRNA:   3'- -GC-GGUUCAUGUaGUUCGGCu-CGCGGc -5'
12975 5' -54.9 NC_003387.1 + 18682 0.74 0.29139
Target:  5'- uCGUCGAGUACAccgGGGUgGGGCGCCGu -3'
miRNA:   3'- -GCGGUUCAUGUag-UUCGgCUCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 42197 0.74 0.29139
Target:  5'- gGCCGAacccGgcccGCAUCGccgAGCCGAGCGCCc -3'
miRNA:   3'- gCGGUU----Ca---UGUAGU---UCGGCUCGCGGc -5'
12975 5' -54.9 NC_003387.1 + 16059 0.74 0.294345
Target:  5'- gGCCAGGU-CggCGAGCCGgugaugccacucgggGGCGCCGu -3'
miRNA:   3'- gCGGUUCAuGuaGUUCGGC---------------UCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 30247 0.74 0.29882
Target:  5'- gGCCGGGU-CGUCgGGGUCG-GCGCCGg -3'
miRNA:   3'- gCGGUUCAuGUAG-UUCGGCuCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 13151 0.73 0.305633
Target:  5'- aCGCCGAgcaccgcGUGCAgaAGGCCGAGCGCg- -3'
miRNA:   3'- -GCGGUU-------CAUGUagUUCGGCUCGCGgc -5'
12975 5' -54.9 NC_003387.1 + 18317 0.73 0.31412
Target:  5'- cCGgCGAGUGCGUCGucGCUGGucGCGCCGu -3'
miRNA:   3'- -GCgGUUCAUGUAGUu-CGGCU--CGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 45953 0.73 0.31412
Target:  5'- gGCCAGGUugAUCugguucucGCCG-GUGCCGa -3'
miRNA:   3'- gCGGUUCAugUAGuu------CGGCuCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.