miRNA display CGI


Results 21 - 40 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12980 5' -63.2 NC_003387.1 + 2010 0.7 0.197089
Target:  5'- uGAcGCUGGCCCUGCucggugccgccgacgGCCGCCgucgCCGAGc -3'
miRNA:   3'- gCU-CGACUGGGGCG---------------UGGCGG----GGCUCc -5'
12980 5' -63.2 NC_003387.1 + 41447 0.7 0.200088
Target:  5'- cCGGcGC-GGCCCUGaCGCCGCCCUGAc- -3'
miRNA:   3'- -GCU-CGaCUGGGGC-GUGGCGGGGCUcc -5'
12980 5' -63.2 NC_003387.1 + 31770 0.69 0.205175
Target:  5'- --cGCcGAgCCCGCACCGCgCCGAa- -3'
miRNA:   3'- gcuCGaCUgGGGCGUGGCGgGGCUcc -5'
12980 5' -63.2 NC_003387.1 + 41264 0.69 0.205175
Target:  5'- uGAcGCUGACCgUGCGCCcCCUCGAcGGc -3'
miRNA:   3'- gCU-CGACUGGgGCGUGGcGGGGCU-CC- -5'
12980 5' -63.2 NC_003387.1 + 42175 0.69 0.210373
Target:  5'- gGAGCUGACCgaGCGCCuCaaCGAGGc -3'
miRNA:   3'- gCUCGACUGGggCGUGGcGggGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 27497 0.69 0.21784
Target:  5'- uCGAGCggcuguggcgcgaaGAUCCgGcCGCCGCCgCGAGGu -3'
miRNA:   3'- -GCUCGa-------------CUGGGgC-GUGGCGGgGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 11438 0.69 0.220561
Target:  5'- gGuGCUcGugCCCGCGCugcagcuCGCCgCCGGGGc -3'
miRNA:   3'- gCuCGA-CugGGGCGUG-------GCGG-GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 45863 0.69 0.221109
Target:  5'- gCGAGCUGcugcgGCUgCGCGCCGCggCCGAGcGg -3'
miRNA:   3'- -GCUCGAC-----UGGgGCGUGGCGg-GGCUC-C- -5'
12980 5' -63.2 NC_003387.1 + 40516 0.69 0.231168
Target:  5'- --cGgUGGCCCgGCACCGagcagcgaccugCCCGAGGg -3'
miRNA:   3'- gcuCgACUGGGgCGUGGCg-----------GGGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 50462 0.69 0.232309
Target:  5'- uCGAGCcGACCCCG----GCCCgCGAGGu -3'
miRNA:   3'- -GCUCGaCUGGGGCguggCGGG-GCUCC- -5'
12980 5' -63.2 NC_003387.1 + 3520 0.69 0.232309
Target:  5'- cCGGcGCcagUGcCCCCGcCGCCGCCCC-AGGc -3'
miRNA:   3'- -GCU-CG---ACuGGGGC-GUGGCGGGGcUCC- -5'
12980 5' -63.2 NC_003387.1 + 22950 0.68 0.238086
Target:  5'- gCGcAGCUGACCgCGUggGgCGCCCCGGu- -3'
miRNA:   3'- -GC-UCGACUGGgGCG--UgGCGGGGCUcc -5'
12980 5' -63.2 NC_003387.1 + 50947 0.68 0.250001
Target:  5'- gCGGGCUuucagcucgGGCgCCaGCGCCGCCgCCGGGc -3'
miRNA:   3'- -GCUCGA---------CUGgGG-CGUGGCGG-GGCUCc -5'
12980 5' -63.2 NC_003387.1 + 36722 0.68 0.250001
Target:  5'- uCGAGCUGcccgGCCUCGaCGCCGUCUgCGAGc -3'
miRNA:   3'- -GCUCGAC----UGGGGC-GUGGCGGG-GCUCc -5'
12980 5' -63.2 NC_003387.1 + 16986 0.68 0.250001
Target:  5'- gCGGGCgGGCUgCGuCAUCGaCCCCGAGcGg -3'
miRNA:   3'- -GCUCGaCUGGgGC-GUGGC-GGGGCUC-C- -5'
12980 5' -63.2 NC_003387.1 + 25944 0.68 0.266861
Target:  5'- uCGAGCgGugCUgGCGCUGCUcgcuaacccguucgCCGAGGu -3'
miRNA:   3'- -GCUCGaCugGGgCGUGGCGG--------------GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 30061 0.68 0.26879
Target:  5'- aCGAGCgcGCCCUG-ACgGCCgCCGGGGc -3'
miRNA:   3'- -GCUCGacUGGGGCgUGgCGG-GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 29956 0.68 0.26879
Target:  5'- --uGCcGACCUCGCGCCGUuuCgCGAGGu -3'
miRNA:   3'- gcuCGaCUGGGGCGUGGCG--GgGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 36231 0.68 0.274644
Target:  5'- cCGAGCUGACCgUGUacgccgacccGCUGCCCUGcucgaaaugcucaAGGu -3'
miRNA:   3'- -GCUCGACUGGgGCG----------UGGCGGGGC-------------UCC- -5'
12980 5' -63.2 NC_003387.1 + 42424 0.68 0.275301
Target:  5'- gCGucCUGGCCUgCGCGCUgaGCgCCCGAGGu -3'
miRNA:   3'- -GCucGACUGGG-GCGUGG--CG-GGGCUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.