Results 1 - 20 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 47719 | 1.07 | 0.000472 |
Target: 5'- uGACACCGGCGCAGGCCCGCAGAAUCGc -3' miRNA: 3'- -CUGUGGCCGCGUCCGGGCGUCUUAGC- -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 48175 | 0.76 | 0.10311 |
Target: 5'- cGCGCaGGCGCAGGCCCGCAaGGUg- -3' miRNA: 3'- cUGUGgCCGCGUCCGGGCGUcUUAgc -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 27870 | 0.74 | 0.132023 |
Target: 5'- cGACACCGGCGC-GGUCgaGCAGGAgccCGg -3' miRNA: 3'- -CUGUGGCCGCGuCCGGg-CGUCUUa--GC- -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 19160 | 0.74 | 0.151162 |
Target: 5'- cGACGCUgucgagGGCGC-GGCCCGCAcGGUCGc -3' miRNA: 3'- -CUGUGG------CCGCGuCCGGGCGUcUUAGC- -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 21542 | 0.73 | 0.177431 |
Target: 5'- aGCACCGGCGac-GCCCGCGucGUCGu -3' miRNA: 3'- cUGUGGCCGCgucCGGGCGUcuUAGC- -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 6987 | 0.72 | 0.187053 |
Target: 5'- -cCACUuGUGCAGGCgCCGCAGAauGUCGc -3' miRNA: 3'- cuGUGGcCGCGUCCG-GGCGUCU--UAGC- -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 49070 | 0.72 | 0.194059 |
Target: 5'- -uCACCGG-GCAGGCUCGCGGcgcgcaggcguacgaAGUCGa -3' miRNA: 3'- cuGUGGCCgCGUCCGGGCGUC---------------UUAGC- -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 22556 | 0.72 | 0.204465 |
Target: 5'- cGACGCggUGGCGCAGgcagauaacccgcacGCCCGCGGGuUCGc -3' miRNA: 3'- -CUGUG--GCCGCGUC---------------CGGGCGUCUuAGC- -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 4774 | 0.72 | 0.20768 |
Target: 5'- cGGCGCCGugacuucauGuCGCAGGCCCGCGGcgaCGg -3' miRNA: 3'- -CUGUGGC---------C-GCGUCCGGGCGUCuuaGC- -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 42146 | 0.72 | 0.20768 |
Target: 5'- cGugG-CGGCGguGGCCCGCuGucGAUCGa -3' miRNA: 3'- -CugUgGCCGCguCCGGGCGuC--UUAGC- -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 21467 | 0.71 | 0.242282 |
Target: 5'- -cCGCUGGCGCA-GCCCGCGccgGUCGg -3' miRNA: 3'- cuGUGGCCGCGUcCGGGCGUcu-UAGC- -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 1295 | 0.7 | 0.25484 |
Target: 5'- --gACCGGCGCAguucgaggcGGCgCCGCAGGcgCu -3' miRNA: 3'- cugUGGCCGCGU---------CCG-GGCGUCUuaGc -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 2719 | 0.7 | 0.261317 |
Target: 5'- cGACGCgGGCggcggGCAGGCCaCGCAGcAGcCGg -3' miRNA: 3'- -CUGUGgCCG-----CGUCCGG-GCGUC-UUaGC- -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 31256 | 0.7 | 0.267928 |
Target: 5'- --gACCGGCGCGGGCUgcgccaGCGGGGcCGg -3' miRNA: 3'- cugUGGCCGCGUCCGGg-----CGUCUUaGC- -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 41801 | 0.7 | 0.267928 |
Target: 5'- cGAC-CUGGCGCAcGCCUgGCAGAucAUCGa -3' miRNA: 3'- -CUGuGGCCGCGUcCGGG-CGUCU--UAGC- -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 44276 | 0.69 | 0.288569 |
Target: 5'- cGCGCCGcGCGguGGCUCGCcGuGUCu -3' miRNA: 3'- cUGUGGC-CGCguCCGGGCGuCuUAGc -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 24865 | 0.69 | 0.288569 |
Target: 5'- cGCGCCGGUGUcgaucguGGCgCCGCGGcuGUCGa -3' miRNA: 3'- cUGUGGCCGCGu------CCG-GGCGUCu-UAGC- -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 14931 | 0.69 | 0.295722 |
Target: 5'- cGGCuACCGGCGCAGcggcgcaucCCCGguGGuAUCGg -3' miRNA: 3'- -CUG-UGGCCGCGUCc--------GGGCguCU-UAGC- -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 29423 | 0.69 | 0.303012 |
Target: 5'- gGAgGCCGcCGCAgcGGCCCGCGcGGUCGc -3' miRNA: 3'- -CUgUGGCcGCGU--CCGGGCGUcUUAGC- -5' |
|||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 48488 | 0.69 | 0.303012 |
Target: 5'- uGAgGCCGucGCgGCGGGCCUGCAGGuaAUCc -3' miRNA: 3'- -CUgUGGC--CG-CGUCCGGGCGUCU--UAGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home