miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12991 5' -59.7 NC_003387.1 + 959 0.66 0.476871
Target:  5'- cGCACCGGaccCGCAcGGCC-GCAGAGa-- -3'
miRNA:   3'- cUGUGGCC---GCGU-CCGGgCGUCUUagc -5'
12991 5' -59.7 NC_003387.1 + 1295 0.7 0.25484
Target:  5'- --gACCGGCGCAguucgaggcGGCgCCGCAGGcgCu -3'
miRNA:   3'- cugUGGCCGCGU---------CCG-GGCGUCUuaGc -5'
12991 5' -59.7 NC_003387.1 + 1411 0.66 0.46701
Target:  5'- cGCACCGGaCGUcGGCCCG-AGcGAUCc -3'
miRNA:   3'- cUGUGGCC-GCGuCCGGGCgUC-UUAGc -5'
12991 5' -59.7 NC_003387.1 + 1771 0.69 0.324156
Target:  5'- cGGCGCUGGCGCccgagcugaaaGCCCGCAaGGUCa -3'
miRNA:   3'- -CUGUGGCCGCGuc---------CGGGCGUcUUAGc -5'
12991 5' -59.7 NC_003387.1 + 2719 0.7 0.261317
Target:  5'- cGACGCgGGCggcggGCAGGCCaCGCAGcAGcCGg -3'
miRNA:   3'- -CUGUGgCCG-----CGUCCGG-GCGUC-UUaGC- -5'
12991 5' -59.7 NC_003387.1 + 3323 0.66 0.456285
Target:  5'- uGCugUGGCGUgacaccgAGGCCCGCucguuuGGcgCGg -3'
miRNA:   3'- cUGugGCCGCG-------UCCGGGCGu-----CUuaGC- -5'
12991 5' -59.7 NC_003387.1 + 4534 0.67 0.392242
Target:  5'- -cCGCCGGUGCGGGCaCCuuGCGGGc--- -3'
miRNA:   3'- cuGUGGCCGCGUCCG-GG--CGUCUuagc -5'
12991 5' -59.7 NC_003387.1 + 4591 0.69 0.310439
Target:  5'- cGCGCUGcGCGCGGGUCUGCcacguGAUCGg -3'
miRNA:   3'- cUGUGGC-CGCGUCCGGGCGuc---UUAGC- -5'
12991 5' -59.7 NC_003387.1 + 4774 0.72 0.20768
Target:  5'- cGGCGCCGugacuucauGuCGCAGGCCCGCGGcgaCGg -3'
miRNA:   3'- -CUGUGGC---------C-GCGUCCGGGCGUCuuaGC- -5'
12991 5' -59.7 NC_003387.1 + 4926 0.67 0.419372
Target:  5'- uGC-CCGGCGCGGcGUCgCGCGuuGUCGa -3'
miRNA:   3'- cUGuGGCCGCGUC-CGG-GCGUcuUAGC- -5'
12991 5' -59.7 NC_003387.1 + 4961 0.67 0.427731
Target:  5'- aGACcaGCCGGU-CAGGCCgugcucgCGCAGAgGUCGg -3'
miRNA:   3'- -CUG--UGGCCGcGUCCGG-------GCGUCU-UAGC- -5'
12991 5' -59.7 NC_003387.1 + 6987 0.72 0.187053
Target:  5'- -cCACUuGUGCAGGCgCCGCAGAauGUCGc -3'
miRNA:   3'- cuGUGGcCGCGUCCG-GGCGUCU--UAGC- -5'
12991 5' -59.7 NC_003387.1 + 7274 0.67 0.428666
Target:  5'- uGGCuccaCGGCGCAGGCCCgGC-GAGc-- -3'
miRNA:   3'- -CUGug--GCCGCGUCCGGG-CGuCUUagc -5'
12991 5' -59.7 NC_003387.1 + 10409 0.67 0.383456
Target:  5'- cGGCGCuCGGCaaGCAguacGGCUCGCGGcuGUCGg -3'
miRNA:   3'- -CUGUG-GCCG--CGU----CCGGGCGUCu-UAGC- -5'
12991 5' -59.7 NC_003387.1 + 12365 0.66 0.476871
Target:  5'- aACGCCGcCGCGacGGCCCGCA--AUCu -3'
miRNA:   3'- cUGUGGCcGCGU--CCGGGCGUcuUAGc -5'
12991 5' -59.7 NC_003387.1 + 12614 0.66 0.457255
Target:  5'- cGACGCCGGgcCGCc-GCCUGCgaGGAAUCc -3'
miRNA:   3'- -CUGUGGCC--GCGucCGGGCG--UCUUAGc -5'
12991 5' -59.7 NC_003387.1 + 14097 0.68 0.349641
Target:  5'- aGCGCCaGCGC-GGCCUGCGGGc--- -3'
miRNA:   3'- cUGUGGcCGCGuCCGGGCGUCUuagc -5'
12991 5' -59.7 NC_003387.1 + 14931 0.69 0.295722
Target:  5'- cGGCuACCGGCGCAGcggcgcaucCCCGguGGuAUCGg -3'
miRNA:   3'- -CUG-UGGCCGCGUCc--------GGGCguCU-UAGC- -5'
12991 5' -59.7 NC_003387.1 + 15835 0.68 0.340722
Target:  5'- uGACGCCGaCGCGGuGCCCGuCGGcgagcacAAUCGu -3'
miRNA:   3'- -CUGUGGCcGCGUC-CGGGC-GUC-------UUAGC- -5'
12991 5' -59.7 NC_003387.1 + 16365 0.67 0.392242
Target:  5'- uGCGCCGucaUGCAGGCCCGUcGuuUCGc -3'
miRNA:   3'- cUGUGGCc--GCGUCCGGGCGuCuuAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.