miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12991 5' -59.7 NC_003387.1 + 47719 1.07 0.000472
Target:  5'- uGACACCGGCGCAGGCCCGCAGAAUCGc -3'
miRNA:   3'- -CUGUGGCCGCGUCCGGGCGUCUUAGC- -5'
12991 5' -59.7 NC_003387.1 + 30689 0.68 0.374801
Target:  5'- cGCACCGGCGgGGGCguuuucgugcgcCUGCGGGG-CGc -3'
miRNA:   3'- cUGUGGCCGCgUCCG------------GGCGUCUUaGC- -5'
12991 5' -59.7 NC_003387.1 + 47166 0.67 0.392242
Target:  5'- gGGCACC-GCGguGGCCCuGguG-GUCGc -3'
miRNA:   3'- -CUGUGGcCGCguCCGGG-CguCuUAGC- -5'
12991 5' -59.7 NC_003387.1 + 38608 0.66 0.476871
Target:  5'- gGugAUCgaGGCGCuguucGGCCCGCAGGccgCGc -3'
miRNA:   3'- -CugUGG--CCGCGu----CCGGGCGUCUua-GC- -5'
12991 5' -59.7 NC_003387.1 + 21542 0.73 0.177431
Target:  5'- aGCACCGGCGac-GCCCGCGucGUCGu -3'
miRNA:   3'- cUGUGGCCGCgucCGGGCGUcuUAGC- -5'
12991 5' -59.7 NC_003387.1 + 49070 0.72 0.194059
Target:  5'- -uCACCGG-GCAGGCUCGCGGcgcgcaggcguacgaAGUCGa -3'
miRNA:   3'- cuGUGGCCgCGUCCGGGCGUC---------------UUAGC- -5'
12991 5' -59.7 NC_003387.1 + 4774 0.72 0.20768
Target:  5'- cGGCGCCGugacuucauGuCGCAGGCCCGCGGcgaCGg -3'
miRNA:   3'- -CUGUGGC---------C-GCGUCCGGGCGUCuuaGC- -5'
12991 5' -59.7 NC_003387.1 + 42146 0.72 0.20768
Target:  5'- cGugG-CGGCGguGGCCCGCuGucGAUCGa -3'
miRNA:   3'- -CugUgGCCGCguCCGGGCGuC--UUAGC- -5'
12991 5' -59.7 NC_003387.1 + 41801 0.7 0.267928
Target:  5'- cGAC-CUGGCGCAcGCCUgGCAGAucAUCGa -3'
miRNA:   3'- -CUGuGGCCGCGUcCGGG-CGUCU--UAGC- -5'
12991 5' -59.7 NC_003387.1 + 37789 0.68 0.347192
Target:  5'- cGCGCCugGGCGCAGcaCCCGCGGucgcagcagcgcgcGAUCGg -3'
miRNA:   3'- cUGUGG--CCGCGUCc-GGGCGUC--------------UUAGC- -5'
12991 5' -59.7 NC_003387.1 + 14931 0.69 0.295722
Target:  5'- cGGCuACCGGCGCAGcggcgcaucCCCGguGGuAUCGg -3'
miRNA:   3'- -CUG-UGGCCGCGUCc--------GGGCguCU-UAGC- -5'
12991 5' -59.7 NC_003387.1 + 2719 0.7 0.261317
Target:  5'- cGACGCgGGCggcggGCAGGCCaCGCAGcAGcCGg -3'
miRNA:   3'- -CUGUGgCCG-----CGUCCGG-GCGUC-UUaGC- -5'
12991 5' -59.7 NC_003387.1 + 48175 0.76 0.10311
Target:  5'- cGCGCaGGCGCAGGCCCGCAaGGUg- -3'
miRNA:   3'- cUGUGgCCGCGUCCGGGCGUcUUAgc -5'
12991 5' -59.7 NC_003387.1 + 29423 0.69 0.303012
Target:  5'- gGAgGCCGcCGCAgcGGCCCGCGcGGUCGc -3'
miRNA:   3'- -CUgUGGCcGCGU--CCGGGCGUcUUAGC- -5'
12991 5' -59.7 NC_003387.1 + 27870 0.74 0.132023
Target:  5'- cGACACCGGCGC-GGUCgaGCAGGAgccCGg -3'
miRNA:   3'- -CUGUGGCCGCGuCCGGg-CGUCUUa--GC- -5'
12991 5' -59.7 NC_003387.1 + 21467 0.71 0.242282
Target:  5'- -cCGCUGGCGCA-GCCCGCGccgGUCGg -3'
miRNA:   3'- cuGUGGCCGCGUcCGGGCGUcu-UAGC- -5'
12991 5' -59.7 NC_003387.1 + 1771 0.69 0.324156
Target:  5'- cGGCGCUGGCGCccgagcugaaaGCCCGCAaGGUCa -3'
miRNA:   3'- -CUGUGGCCGCGuc---------CGGGCGUcUUAGc -5'
12991 5' -59.7 NC_003387.1 + 10409 0.67 0.383456
Target:  5'- cGGCGCuCGGCaaGCAguacGGCUCGCGGcuGUCGg -3'
miRNA:   3'- -CUGUG-GCCG--CGU----CCGGGCGUCu-UAGC- -5'
12991 5' -59.7 NC_003387.1 + 19160 0.74 0.151162
Target:  5'- cGACGCUgucgagGGCGC-GGCCCGCAcGGUCGc -3'
miRNA:   3'- -CUGUGG------CCGCGuCCGGGCGUcUUAGC- -5'
12991 5' -59.7 NC_003387.1 + 22556 0.72 0.204465
Target:  5'- cGACGCggUGGCGCAGgcagauaacccgcacGCCCGCGGGuUCGc -3'
miRNA:   3'- -CUGUG--GCCGCGUC---------------CGGGCGUCUuAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.