miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12993 3' -60.2 NC_003387.1 + 48561 1.07 0.000458
Target:  5'- cACGUGCCAGGCGUGCAUCGACGCCCGc -3'
miRNA:   3'- -UGCACGGUCCGCACGUAGCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 41328 0.79 0.06163
Target:  5'- cAUGUGCCAGGCGUGCGUgaaGCGCCa- -3'
miRNA:   3'- -UGCACGGUCCGCACGUAgc-UGCGGgc -5'
12993 3' -60.2 NC_003387.1 + 10925 0.77 0.079281
Target:  5'- --cUGCCAGGCGUGCgccagGUCGcggcacGCGCCCGg -3'
miRNA:   3'- ugcACGGUCCGCACG-----UAGC------UGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 38162 0.77 0.086174
Target:  5'- aACG-GCCAGGCG-GCGUCGACcGCCa- -3'
miRNA:   3'- -UGCaCGGUCCGCaCGUAGCUG-CGGgc -5'
12993 3' -60.2 NC_003387.1 + 6809 0.74 0.138712
Target:  5'- cACGUGCCgacguacugcagaucGGGCG-GCAggUCGAuCGCCCGc -3'
miRNA:   3'- -UGCACGG---------------UCCGCaCGU--AGCU-GCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 1551 0.73 0.156889
Target:  5'- ---cGCCAGGCGUacguGCAUacCGGCGCCCc -3'
miRNA:   3'- ugcaCGGUCCGCA----CGUA--GCUGCGGGc -5'
12993 3' -60.2 NC_003387.1 + 20207 0.73 0.161116
Target:  5'- cACG-GCCGGGCGUGCAcgcagcggcagUCGuCGCaCCa -3'
miRNA:   3'- -UGCaCGGUCCGCACGU-----------AGCuGCG-GGc -5'
12993 3' -60.2 NC_003387.1 + 32459 0.72 0.174417
Target:  5'- -aGUGCCuagcgccaugcGGGCGUuuGCGUCGAC-CCCGg -3'
miRNA:   3'- ugCACGG-----------UCCGCA--CGUAGCUGcGGGC- -5'
12993 3' -60.2 NC_003387.1 + 31181 0.72 0.188689
Target:  5'- -gGUGCCGGGCG-GCAcgUCGaacgcgacgcGCGCCUGa -3'
miRNA:   3'- ugCACGGUCCGCaCGU--AGC----------UGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 45932 0.71 0.203978
Target:  5'- cACGUGCCcGaGCGUGUucgcCGACGgCCCGc -3'
miRNA:   3'- -UGCACGGuC-CGCACGua--GCUGC-GGGC- -5'
12993 3' -60.2 NC_003387.1 + 33028 0.71 0.20877
Target:  5'- cACGagcUGCgAGGCGUcgaacgaGcCGUCGACGCCCa -3'
miRNA:   3'- -UGC---ACGgUCCGCA-------C-GUAGCUGCGGGc -5'
12993 3' -60.2 NC_003387.1 + 636 0.71 0.214758
Target:  5'- aGCGUcGCCGccGCG-GCAgCGACGCCCGa -3'
miRNA:   3'- -UGCA-CGGUc-CGCaCGUaGCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 11944 0.71 0.220329
Target:  5'- cGCGggaucuugGUCgAGGCGcaccucggUGUAUCGACGCCCGc -3'
miRNA:   3'- -UGCa-------CGG-UCCGC--------ACGUAGCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 24434 0.71 0.226023
Target:  5'- -gGUGcCCAGGCGUGCAguugagccUUGGCGgCCu -3'
miRNA:   3'- ugCAC-GGUCCGCACGU--------AGCUGCgGGc -5'
12993 3' -60.2 NC_003387.1 + 32535 0.71 0.230083
Target:  5'- cCGUGCgAGGCGcagcaGCGcaucaaccgcgcccUCGACGCCCu -3'
miRNA:   3'- uGCACGgUCCGCa----CGU--------------AGCUGCGGGc -5'
12993 3' -60.2 NC_003387.1 + 45100 0.71 0.231841
Target:  5'- gGCG-GCCAGGU---CGUCGACGCCgCGg -3'
miRNA:   3'- -UGCaCGGUCCGcacGUAGCUGCGG-GC- -5'
12993 3' -60.2 NC_003387.1 + 3422 0.71 0.231841
Target:  5'- cCGUGCCcucGGCGUGC-UCGGCGagcaCCUGg -3'
miRNA:   3'- uGCACGGu--CCGCACGuAGCUGC----GGGC- -5'
12993 3' -60.2 NC_003387.1 + 51223 0.7 0.243856
Target:  5'- cACGUcgGCCGcGGCcugGUGCucgacGUCGACGCCCu -3'
miRNA:   3'- -UGCA--CGGU-CCG---CACG-----UAGCUGCGGGc -5'
12993 3' -60.2 NC_003387.1 + 12919 0.7 0.262843
Target:  5'- -gGUGCCuaguGGUGgcuCGUCGGCGCUCGg -3'
miRNA:   3'- ugCACGGu---CCGCac-GUAGCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 3285 0.7 0.262843
Target:  5'- uGCGUGCCGGGUacUGCucggCGACGUUCa -3'
miRNA:   3'- -UGCACGGUCCGc-ACGua--GCUGCGGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.