miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12993 3' -60.2 NC_003387.1 + 636 0.71 0.214758
Target:  5'- aGCGUcGCCGccGCG-GCAgCGACGCCCGa -3'
miRNA:   3'- -UGCA-CGGUc-CGCaCGUaGCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 1123 0.68 0.342729
Target:  5'- gACGcuaggGCgCAcGGUGUGC-UCGGCGCCUGc -3'
miRNA:   3'- -UGCa----CG-GU-CCGCACGuAGCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 1551 0.73 0.156889
Target:  5'- ---cGCCAGGCGUacguGCAUacCGGCGCCCc -3'
miRNA:   3'- ugcaCGGUCCGCA----CGUA--GCUGCGGGc -5'
12993 3' -60.2 NC_003387.1 + 1757 0.69 0.290005
Target:  5'- cAUGaGCCcGGCGgcgGCGcUGGCGCCCGa -3'
miRNA:   3'- -UGCaCGGuCCGCa--CGUaGCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 2455 0.68 0.334791
Target:  5'- cGCGcGCCAGGCcgagGUGCAc---CGCCCGg -3'
miRNA:   3'- -UGCaCGGUCCG----CACGUagcuGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 3229 0.68 0.349989
Target:  5'- cACGUcgacGCCGGGCGggcGCAcCGgccgaaaccaaguGCGCCCGu -3'
miRNA:   3'- -UGCA----CGGUCCGCa--CGUaGC-------------UGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 3285 0.7 0.262843
Target:  5'- uGCGUGCCGGGUacUGCucggCGACGUUCa -3'
miRNA:   3'- -UGCACGGUCCGc-ACGua--GCUGCGGGc -5'
12993 3' -60.2 NC_003387.1 + 3321 0.69 0.276158
Target:  5'- -gGUGCUGuGGCGUGaCAcCGAgGCCCGc -3'
miRNA:   3'- ugCACGGU-CCGCAC-GUaGCUgCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 3422 0.71 0.231841
Target:  5'- cCGUGCCcucGGCGUGC-UCGGCGagcaCCUGg -3'
miRNA:   3'- uGCACGGu--CCGCACGuAGCUGC----GGGC- -5'
12993 3' -60.2 NC_003387.1 + 3882 0.66 0.457749
Target:  5'- gGCGUGCacgcCGUGCGUCG-CGCCg- -3'
miRNA:   3'- -UGCACGguccGCACGUAGCuGCGGgc -5'
12993 3' -60.2 NC_003387.1 + 4150 0.68 0.31932
Target:  5'- uCG-GCgAGGCGgGCGUCGAugcaCGCCUGg -3'
miRNA:   3'- uGCaCGgUCCGCaCGUAGCU----GCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 4210 0.66 0.466462
Target:  5'- cGCGUGucggcCCAGGacuggucgaaaauCGuUGCGUCGGCGCCg- -3'
miRNA:   3'- -UGCAC-----GGUCC-------------GC-ACGUAGCUGCGGgc -5'
12993 3' -60.2 NC_003387.1 + 5983 0.66 0.457749
Target:  5'- cCG-GCCGGuugccgcCGUGCAUCGuccacuCGCCCGc -3'
miRNA:   3'- uGCaCGGUCc------GCACGUAGCu-----GCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 6809 0.74 0.138712
Target:  5'- cACGUGCCgacguacugcagaucGGGCG-GCAggUCGAuCGCCCGc -3'
miRNA:   3'- -UGCACGG---------------UCCGCaCGU--AGCU-GCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 6836 0.7 0.269434
Target:  5'- uACGUGCUGGGUGUGagcgCGAcCGCUCa -3'
miRNA:   3'- -UGCACGGUCCGCACgua-GCU-GCGGGc -5'
12993 3' -60.2 NC_003387.1 + 7273 0.66 0.429355
Target:  5'- gACGgGUUcGGCGUGaCGUUcACGCCCGg -3'
miRNA:   3'- -UGCaCGGuCCGCAC-GUAGcUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 7973 0.69 0.283014
Target:  5'- cACGgcgGgCGGGUGcUGCGcuUCGGCGCCCc -3'
miRNA:   3'- -UGCa--CgGUCCGC-ACGU--AGCUGCGGGc -5'
12993 3' -60.2 NC_003387.1 + 8921 0.68 0.342729
Target:  5'- aACGUGCUcacguccgAGGCcaccgcgaUGCA-CGGCGCCCGc -3'
miRNA:   3'- -UGCACGG--------UCCGc-------ACGUaGCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 10925 0.77 0.079281
Target:  5'- --cUGCCAGGCGUGCgccagGUCGcggcacGCGCCCGg -3'
miRNA:   3'- ugcACGGUCCGCACG-----UAGC------UGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 11369 0.67 0.402024
Target:  5'- gACG-GCCGGGuCGUcguuugcgGCgAUCGGCGCCaCGc -3'
miRNA:   3'- -UGCaCGGUCC-GCA--------CG-UAGCUGCGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.