miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12993 3' -60.2 NC_003387.1 + 48561 1.07 0.000458
Target:  5'- cACGUGCCAGGCGUGCAUCGACGCCCGc -3'
miRNA:   3'- -UGCACGGUCCGCACGUAGCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 34051 0.67 0.367351
Target:  5'- gGCGUGUgGGGCG-GCcUaaGCGCCCa -3'
miRNA:   3'- -UGCACGgUCCGCaCGuAgcUGCGGGc -5'
12993 3' -60.2 NC_003387.1 + 33476 0.67 0.375824
Target:  5'- -aGUcGCCgAGGCG---GUCGGCGCCCGc -3'
miRNA:   3'- ugCA-CGG-UCCGCacgUAGCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 19453 0.66 0.467435
Target:  5'- cCGUGCgGGcGCGUGUcaguGUgGGCGCCg- -3'
miRNA:   3'- uGCACGgUC-CGCACG----UAgCUGCGGgc -5'
12993 3' -60.2 NC_003387.1 + 45932 0.71 0.203978
Target:  5'- cACGUGCCcGaGCGUGUucgcCGACGgCCCGc -3'
miRNA:   3'- -UGCACGGuC-CGCACGua--GCUGC-GGGC- -5'
12993 3' -60.2 NC_003387.1 + 636 0.71 0.214758
Target:  5'- aGCGUcGCCGccGCG-GCAgCGACGCCCGa -3'
miRNA:   3'- -UGCA-CGGUc-CGCaCGUaGCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 45100 0.71 0.231841
Target:  5'- gGCG-GCCAGGU---CGUCGACGCCgCGg -3'
miRNA:   3'- -UGCaCGGUCCGcacGUAGCUGCGG-GC- -5'
12993 3' -60.2 NC_003387.1 + 51223 0.7 0.243856
Target:  5'- cACGUcgGCCGcGGCcugGUGCucgacGUCGACGCCCu -3'
miRNA:   3'- -UGCA--CGGU-CCG---CACG-----UAGCUGCGGGc -5'
12993 3' -60.2 NC_003387.1 + 22981 0.7 0.269434
Target:  5'- uCGUGUCGGGCG-GCGcCGACgacggcaagGCCCGc -3'
miRNA:   3'- uGCACGGUCCGCaCGUaGCUG---------CGGGC- -5'
12993 3' -60.2 NC_003387.1 + 8921 0.68 0.342729
Target:  5'- aACGUGCUcacguccgAGGCcaccgcgaUGCA-CGGCGCCCGc -3'
miRNA:   3'- -UGCACGG--------UCCGc-------ACGUaGCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 1757 0.69 0.290005
Target:  5'- cAUGaGCCcGGCGgcgGCGcUGGCGCCCGa -3'
miRNA:   3'- -UGCaCGGuCCGCa--CGUaGCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 6836 0.7 0.269434
Target:  5'- uACGUGCUGGGUGUGagcgCGAcCGCUCa -3'
miRNA:   3'- -UGCACGGUCCGCACgua-GCU-GCGGGc -5'
12993 3' -60.2 NC_003387.1 + 41328 0.79 0.06163
Target:  5'- cAUGUGCCAGGCGUGCGUgaaGCGCCa- -3'
miRNA:   3'- -UGCACGGUCCGCACGUAgc-UGCGGgc -5'
12993 3' -60.2 NC_003387.1 + 41778 0.68 0.326987
Target:  5'- gACGUcaaGCCGGGCGcgUGCcgCGAccuggcgcaCGCCUGg -3'
miRNA:   3'- -UGCA---CGGUCCGC--ACGuaGCU---------GCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 32459 0.72 0.174417
Target:  5'- -aGUGCCuagcgccaugcGGGCGUuuGCGUCGAC-CCCGg -3'
miRNA:   3'- ugCACGG-----------UCCGCA--CGUAGCUGcGGGC- -5'
12993 3' -60.2 NC_003387.1 + 12919 0.7 0.262843
Target:  5'- -gGUGCCuaguGGUGgcuCGUCGGCGCUCGg -3'
miRNA:   3'- ugCACGGu---CCGCac-GUAGCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 2455 0.68 0.334791
Target:  5'- cGCGcGCCAGGCcgagGUGCAc---CGCCCGg -3'
miRNA:   3'- -UGCaCGGUCCG----CACGUagcuGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 37259 0.67 0.367351
Target:  5'- aACGUGUCGGcccGCGUgGCGgucaaGGCGCCUGg -3'
miRNA:   3'- -UGCACGGUC---CGCA-CGUag---CUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 31181 0.72 0.188689
Target:  5'- -gGUGCCGGGCG-GCAcgUCGaacgcgacgcGCGCCUGa -3'
miRNA:   3'- ugCACGGUCCGCaCGU--AGC----------UGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 32535 0.71 0.230083
Target:  5'- cCGUGCgAGGCGcagcaGCGcaucaaccgcgcccUCGACGCCCu -3'
miRNA:   3'- uGCACGgUCCGCa----CGU--------------AGCUGCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.